Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02704 ATGAGTGACATGGCGAGTCTTCATGCACAAACACACATTTCTTCTTCTTTTGATGCCATGGCTTACCCACCACATTATCGATCACCACAGTTGGGAGACACAACATTCACTAAATTGTTTGTTGGAGGACTCGCATGGGAGACTCCCACAGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAGGCTGTCATTATCACTGACAAGAACACAGGAAAATCAAAAGGCTATGGATTCGTAACATTCTGTGATGAGGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTTTGGGAAGGACTCGACCATCACCACCAAGAGGAAGAGGTGAGTTTTTGTGTTGTAATGCAGGAAGGAATACAGTTCAAGCACAAGTTGTGGCTTCGTACGGTGGTGTTCCGGCAGCAGGACCACCATCACTGCCGCCACCAGCACCACCTCTTATGTACACACCATATGGCTACACAACCTACACTCCTGATTATGGTTACCACCAAGGCACATTGTACAACCCACAGTACTATCAACAACTCTATGGACCATCATCTCCTAACATGGGCATTGGTTCCCCATCATATTACTATGGCTATTCTGTGCAAGCACCACCAAGAAGCACATTTTCTTCACCTCAAGCAAATCGAGTATCAGCTGGACCCTCTTATCTATACTATCCTACACCTATGGATGTCTCCTTCTCTGGATATCGTCCACCCCAACAATCACCAATAAGGCAACCCTTTTCTTCCCCTGCTGATTCACAGACTCAGCAGCGTACCTCTTCTGATCAGAGACAGCATTCGGAGTAG 855 0.4573 MSDMASLHAQTHISSSFDAMAYPPHYRSPQLGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDEESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRGEFLCCNAGRNTVQAQVVASYGGVPAAGPPSLPPPAPPLMYTPYGYTTYTPDYGYHQGTLYNPQYYQQLYGPSSPNMGIGSPSYYYGYSVQAPPRSTFSSPQANRVSAGPSYLYYPTPMDVSFSGYRPPQQSPIRQPFSSPADSQTQQRTSSDQRQHSE. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02704 284 SUPERFAMILY RNA-binding domain, RBD 20 132 IPR035979 GO:0003676
Seca3g02704 284 MobiDBLite consensus disorder prediction 249 278 - -
Seca3g02704 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 96 IPR000504 GO:0003723
Seca3g02704 284 Gene3D - 8 128 IPR012677 -
Seca3g02704 284 CDD RRM_RBM24_RBM38_like 37 112 - -
Seca3g02704 284 MobiDBLite consensus disorder prediction 248 284 - -
Seca3g02704 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 114 IPR000504 GO:0003723
Seca3g02704 284 PANTHER BOULE-RELATED 15 276 - -
Seca3g02704 284 FunFam RNA-binding protein 24-B isoform X1 23 130 - -
Seca3g02704 284 SMART rrm1_1 38 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02704 Seca-Chr3 48871555 48876185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02704 33 209 C2H2 Transcription Factor Family AT2G19380 29.609 1.70e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02704 K25006 - gmx:100811977 358.221