Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02690 ATGGGAAGGTCCCCATGCTGCGATGAGAATGGCCTTAAGAAAGGACCCTGGACTCCTGAAGAAGATCAAAAGCTAGTCCAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCACTCCCTAAGCTAGCCGGTCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGATGGACCAACTATTTAAGGCCTGACATCAAGAGAGGCAAATTTTCTCAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACTCATCTTCCTGGCAGGACAGATAATGAGATCAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCTAGAACTGACCTTGTTTCCACCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGAACTTATGGATCATCAGTCATTGGATGAACAAGCTGTGAGGTTACAAGCAGAGGCAGTTCAGCTAGCAAAGCTTCAATACCTTCATTACTTACTCCAGTCTTCAAATTCCTTGAATATTACCAACTCCTATGACCAAAATGCCATCACAAACATGGAACCTTTCAGTTTGTTAAACTCAATCTCTAATGTTAAAGAGAATAACAACCCAGTTATAGACTACTCATCACAAGTGGATAATACTACTACTACTCCAGCTGCCTCATTTTCTCAGGGGATTGCTAGCTCCCAACCACTCCACCACCCAAGCATGCTACCTCACTTTTTAGACCCACAAGTCTCTTTCAGTTCACAATCATGTTTGAATAATGAGCAGGGTCAAGGTACTAACTTTGCAATGATAAGTCAAGGGGATCACACACTTGATGACTCCTCCTGGATTAGTCCATCTATTCCTCCAAATGCCATAGGGACCACACCTAGTAATCCAGGGGATGCCAGCAGCACCACTTCTAGCTATGGAGGAGGAGGAGGAGTAGGACCCTCATCTTATTGGTCTGAACTATTTTTTGAGGACCCCACTATGCATGAGCTATCTTAG 1038 0.4316 MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTELMDHQSLDEQAVRLQAEAVQLAKLQYLHYLLQSSNSLNITNSYDQNAITNMEPFSLLNSISNVKENNNPVIDYSSQVDNTTTTPAASFSQGIASSQPLHHPSMLPHFLDPQVSFSSQSCLNNEQGQGTNFAMISQGDHTLDDSSWISPSIPPNAIGTTPSNPGDASSTTSSYGGGGGVGPSSYWSELFFEDPTMHELS. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02690 345 SMART sant 13 63 IPR001005 -
Seca3g02690 345 SMART sant 66 114 IPR001005 -
Seca3g02690 345 CDD SANT 69 112 IPR001005 -
Seca3g02690 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g02690 345 FunFam Transcription factor MYB39 69 130 - -
Seca3g02690 345 CDD SANT 16 61 IPR001005 -
Seca3g02690 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca3g02690 345 MobiDBLite consensus disorder prediction 288 323 - -
Seca3g02690 345 Gene3D - 69 116 - -
Seca3g02690 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca3g02690 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g02690 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Seca3g02690 345 FunFam MYB-related transcription factor 13 66 - -
Seca3g02690 345 Coils Coil 151 171 - -
Seca3g02690 345 Gene3D - 13 66 - -
Seca3g02690 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca3g02690 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g02690 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02690 Seca-Chr3 48625362 48627219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02690 1 345 MYB Transcription Factor Family AT1G34670 54.570 4.94e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g02690 Myb_DNA-binding 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02690 K09422 - gmx:100811162 568.926