Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02671 ATGACGAACCAGAATGTGGTGACTCCTGAAATCAAGTCATGTATTAGTATTACCACGCTTATTGCCGTGGCAGCTTCCATTTCAAACTCACCCGTCTTACCAACTGAATCTCTTGCTGTTCTTGGTGGGTTCTTAGGCTTTCCAAACAAAAATTTTATGAAAAGGTTGGAAAGTTCTAAAGTTAACACCTGGATTGATTCAATGAGAGCTTCTTCTCCAACTCGTGTCACATCTAACCTAACTGCTTCAGAAAACCAAGAAACAAGTTCTTGGATTCTTTATCATCCTTCAGCGCTGAACAAGTTTGATCAGATAACATATAACTCGAAAAGAAAACAGATTGTGATCTTTCTTGACTACGATGGAACTCTCTCTCCGATTGTTGCAGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGCAACACTTAAGGACATAGCAAGACATTTTCCCACTGCGATAGTTACCGGAAGGTGCAGAGACAAGGTATTTAATTTTGTAAAATTGGGAGAACTGTACTACGCAGCAAGCCATGGCATGGACATTATGGGGCCAACAAAAAGCCGAAGCGCAGAGAAAGGTAATAATGAAGCACTGCGGTTCCAACCTGCGAGTCAATTCCTACCAATGATCGATGAGGTGTACAAAATACTGCTAGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAGAACAACAAATTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGAGTTGGGCACCATTGGCGGAGAAAGTTAGATTGGTGCTTAATGAGTATCCACAACTTAAGCTAACCCAAGGAAGAAAAGTGCTAGAGATTCGACCAACCATCAAATGGGACAAGGGCAGGGCACTTGAGTTTTTGTTAGAATCACTAGGATACGAGAATTCTAATGACGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGCAGAAGGGGTCAGGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCCCAGGCAAGTTGA 1065 0.415 MTNQNVVTPEIKSCISITTLIAVAASISNSPVLPTESLAVLGGFLGFPNKNFMKRLESSKVNTWIDSMRASSPTRVTSNLTASENQETSSWILYHPSALNKFDQITYNSKRKQIVIFLDYDGTLSPIVADPDKAFMTRKMRATLKDIARHFPTAIVTGRCRDKVFNFVKLGELYYAASHGMDIMGPTKSRSAEKGNNEALRFQPASQFLPMIDEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLNEYPQLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSRVPKETDASYTLQDPSQAS. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02671 354 CDD HAD_TPP 115 350 - -
Seca3g02671 354 FunFam Trehalose 6-phosphate phosphatase 205 281 - -
Seca3g02671 354 SUPERFAMILY HAD-like 115 351 IPR036412 -
Seca3g02671 354 Gene3D - 116 347 IPR023214 -
Seca3g02671 354 Gene3D - 205 281 - -
Seca3g02671 354 NCBIfam HAD-IIB family hydrolase 116 326 IPR006379 -
Seca3g02671 354 NCBIfam trehalose-phosphatase 112 352 IPR003337 GO:0003824|GO:0005992
Seca3g02671 354 Pfam Trehalose-phosphatase 117 351 IPR003337 GO:0003824|GO:0005992
Seca3g02671 354 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 353 IPR044651 GO:0004805|GO:0005992
Seca3g02671 354 FunFam Trehalose 6-phosphate phosphatase 211 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02671 Seca-Chr3 48306382 48308848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02671 110 321 Trehalose Biosynthesis Gene Families AT1G70290 28.182 6.76e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02671 K01087 - gmx:100788641 563.533