Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02669 ATGGCAGCTATGATGGGTTTCTACAACAGCACACAATTTCACTCAGATCCATTCAGGGGTGGTGAGCTTATGGAAGTTCTTGAACCTTTTATGAAAAGTTCTTCCCCAACCCCAACTCACTCTCCTTCTTCTTCTCCCTCTCCATCAACCTCATCCCCTTGTTCAAACTCCTCTCTCCCTTGTTCTTCTTTCTCTCCTTCCCCCAACTCCTTCTACTCCTCTCCTTCCCTTCCTCCCTATGGTTGCTCAACATCGATGACCCATGTATTTGCAGATGGGTTATCCAACAACAGCCAAAATTTCATAGGCTTTGAGCAATCAAGTTCCCTTCTTGGCCTCAACCACCTAACCCCATCTCAGATCAATCAGATCCAGGCTCAAATCCAGCAACAGAACTTGTCATGGAATCAGCGTCATCATCATCTCAATCTCAACACCCTCAGCTTCCTCGGTCCTAAACCAATCCCAATGAAGCACGTGGCAGCACCTCCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGGAAATGGGTCGCTGAGATTAGACTTCCAAAGAACCGAACAAGGCTCTGGCTTGGTACCTTTGATACCGCAGAAGAAGCTGCTTTGGCTTACGATAAGGCCGCTTACAAGCTCCGAGGTGACTTTGCAAGGCTCAATTTCCCTAATCTCCGACACCAAGGTTCCTCTGTTGGTGGAGATTTTGGTGAGTACAAGCCTCTTCATTCCTCTGTGGATGCAAAGCTTCAAGCCATTTGTGAAGGCTTGGCTGAGATGCAGAAACAGGGGAAGTCAGACAAGTCTCAGAGCTCGTCCAAGAGGTCGAAAGTTGCTTCCAAGAAGGAATCGGTTGATTTGAAGAAAGGTTCGGTGAAGTCTTGTTGCAAGGTTGAAGCTTCGTTGTCTCCAGTGATGACCGAGAGCGAAGGATCTGAAGGGTCTTCGCCACTTTCGGATCTTACTTTTGGTGATGTGAGCGAACCACAGTGGGAAGGTGATTCGGATAATTTCAATCTGCTCAAGTACCCCTCTTATGAGATCGATTGGGATTCCCTGTGA 1071 0.4818 MAAMMGFYNSTQFHSDPFRGGELMEVLEPFMKSSSPTPTHSPSSSPSPSTSSPCSNSSLPCSSFSPSPNSFYSSPSLPPYGCSTSMTHVFADGLSNNSQNFIGFEQSSSLLGLNHLTPSQINQIQAQIQQQNLSWNQRHHHLNLNTLSFLGPKPIPMKHVAAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKSDKSQSSSKRSKVASKKESVDLKKGSVKSCCKVEASLSPVMTESEGSEGSSPLSDLTFGDVSEPQWEGDSDNFNLLKYPSYEIDWDSL. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02669 356 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 356 - -
Seca3g02669 356 MobiDBLite consensus disorder prediction 271 296 - -
Seca3g02669 356 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700|GO:0006355
Seca3g02669 356 MobiDBLite consensus disorder prediction 264 339 - -
Seca3g02669 356 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Seca3g02669 356 CDD AP2 168 228 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 MobiDBLite consensus disorder prediction 32 59 - -
Seca3g02669 356 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 MobiDBLite consensus disorder prediction 308 326 - -
Seca3g02669 356 FunFam Ethylene-responsive transcription factor 2 168 227 - -
Seca3g02669 356 SMART rav1_2 169 232 IPR001471 GO:0003700|GO:0006355
Seca3g02669 356 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02669 Seca-Chr3 48283038 48284150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02669 1 356 AP2-EREBP Transcription Factor Family AT1G78080 53.117 4.21e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g02669 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02669 K09286 - gmx:100800478 374.015