Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02645 ATGGACTGTCAGTGGGATGAGAATGATGTGTCAGCAAGTCAGGCTGATGGTGAATTATTTGGCAATGCCGAACATGAACAACCTAGTTGTGGTAGTGAGGAAGAAGTAAGTGACAGTGATGTGAGCATAGAGTCAACGAACGCAGAAGATGATGAATGTGATGGAGGCATCGAATTGACAAGTATAAATAATGTGGCTGATTTTGCGAATGTTGAATGGAACAAGTTGAATGAGGAAAGTTTCCTGAAACATGACTTTGCTAACCGAGATTTGGCATTTAGATTCTACAATTGGTATGCTAGAGTGAAAGGTTTTTCAGCACGTAAGGATCGGATTGGAAAAAGAGGCGAGGTCATTGTGCGTAGTACTTTTGTTTGCTACAGAATGGGTGAACATAAAGTCCCTAGTGAAGGGTATAAAAGGGAACCGAAGCGCATAATGAGGTGTGGATGCAAAGCCCATTGCAAGGTACGTTTGAATTTAGACACGCATAGATGGCATGTGAAGGAGTTGTTTGATGAACATAACCATGAATTGCTTGATGAGAGGTTCCAAGGCATGTTACCTCGGCATAGGAGGATGGATGTGAGTGAGTTAATGCAAATGAATGACATAAGGGAAGCCGGGATTGGTACGCCGAGCATTTATCAGGCACTTGCTAATCAGTGTGGTGGATTTGATAGGGTTGGATTTAGGGTTCGTGACATGTACAATGAGATTGTGAAGCAAAGGAAGAGTAAGAAGAATGATGCAAATGAGGCACTTTTGTACTTGGAAAGACTAGTTGTGGGCGATGGAGCAATGTTTGTTAGGCATGAAGTAGATGCTGATGGTAGACTGGAACATGTATTTTGGTGTGATGGAATAAGCCAGGTAGACTATGATGTTTTTGGCGATGTGGTAGCCTTTGATGCGACTTACGGGAAAAATAAATACAAGTGGCCATTAGTAGTTTTCACTGGTGTGAATCATCATCGACAAACAACAATTTTTGCATTTGTTGTTGTTTCTAACGAGACAGAGGATACTTATGTGTGGATACTGGAACAGTTTTTAGAGGCAATGGCAGGGAAACATCCTAAAGCAGTAATTACCGATGGTGATAGAGCAATGAAAAATGCTATTCAGAGGGTTTTTCCAAATGCTACTCACAGGTTGTGCGCTTGGCATTTAATCCGTAATGCAACTAGTAACATTGGCAAAGAAGGGTTTAGTGCTCAATTTGCAAGATGCATGTTAGGTGACTACGAGACTGGACAATTTGAAGCCAAATGGGAAAATTTGATTAATGATTTTGGTGTACAAGAACATAGGTGGATTAGGGAAATGTACCAGAAAAGAGAAATGTGGGCTACCGCTTACCTTAGAGGCACCTTTTTTGTTGGGTATACGACTACATCCCGATGTGAAGGTCTACACTCTCAGTTGAAGAAATTTGTTCATTATAGAAATAATTTAACTGAGTTTTGTCATCACCTGACTCGCTGTGCAAAATACATGAGGCAGAAGGAGGTGGAGGCGGATTTTGATTCTTCAACTGGTGAACAGCTTATACACACAGGGTATTTGCACTTGGAACGTTCAGCGTCTCTCGTTTATACACGTAAGGTATTTATTAATTTTAGACGCATAATGGTTTTGGCTGCCAAGTTGAAGGTAGTTGGTTGCAAGCGATCATGTGCATGTGAAATTTATTTAGTTCGCAAGCATGTGTGTGATGAAAGGGAGTGGCTTGTTACATTCCATCCTAGAACTTGTTGCTTGAGGTGCTCTTGTAAAAGAATGGAGTCATACGGTATTCCATGTGACCATATTTTGGCTGTATTGATGTTTCTAGATATGAAAGAGCTTCCTAAGTCTCTAATTGTGGATAGGTGGACTAAGAAAGCAAAAGAACATTTCTGGAAAAGTAATGGTGTTAGTCCGCAGTATATGCAATCATTGTTTAGGGCTTGGTACCTAGCTATGCTAAAAAGCTGTGAAGAAATGTGTGAAGTAGGATGTTTAACGCAGTTTGGGTTTTATGATACAATGGAGAAGATCGCCACACAAAAGCAATTCCTGAAAGCAAGGAATCAAGCTGCTGCTGTGAATGATGATAATGTTGAGGATCGAAACATGTCTGTGGTGAAGGATCCTATCCGTGTTAGAGGAAAGGGATGTAGTGATATGCTTAGATGTGACGGTGGTGTGCGTAAGCGTAGGCCACGGTGTAGTAGCTGTAGGCGTGAAGGCCATAACAAGACAACCTGCCCACTACGAAACAGTCTTGGGAATATTGCAGGAGGTTCTCAAACCAGACCAGTAGCTAGTGTGGAACTGGGCAGTAGGGAATGGAATCAGTGTGAGTCTTATGTTGATCATGAAGGACAAATGTCTGAATTTAGTGATGGTTGCGAATTATTTTCTGATGATGATGAACAAGAAATGGAACAAGTGTCAGAGACTGAAAGCGAGAGCTTTGAACGGTCAAGAGATAACATGGAAGATGATTTCCTAGACTGA 2505 0.4132 MDCQWDENDVSASQADGELFGNAEHEQPSCGSEEEVSDSDVSIESTNAEDDECDGGIELTSINNVADFANVEWNKLNEESFLKHDFANRDLAFRFYNWYARVKGFSARKDRIGKRGEVIVRSTFVCYRMGEHKVPSEGYKREPKRIMRCGCKAHCKVRLNLDTHRWHVKELFDEHNHELLDERFQGMLPRHRRMDVSELMQMNDIREAGIGTPSIYQALANQCGGFDRVGFRVRDMYNEIVKQRKSKKNDANEALLYLERLVVGDGAMFVRHEVDADGRLEHVFWCDGISQVDYDVFGDVVAFDATYGKNKYKWPLVVFTGVNHHRQTTIFAFVVVSNETEDTYVWILEQFLEAMAGKHPKAVITDGDRAMKNAIQRVFPNATHRLCAWHLIRNATSNIGKEGFSAQFARCMLGDYETGQFEAKWENLINDFGVQEHRWIREMYQKREMWATAYLRGTFFVGYTTTSRCEGLHSQLKKFVHYRNNLTEFCHHLTRCAKYMRQKEVEADFDSSTGEQLIHTGYLHLERSASLVYTRKVFINFRRIMVLAAKLKVVGCKRSCACEIYLVRKHVCDEREWLVTFHPRTCCLRCSCKRMESYGIPCDHILAVLMFLDMKELPKSLIVDRWTKKAKEHFWKSNGVSPQYMQSLFRAWYLAMLKSCEEMCEVGCLTQFGFYDTMEKIATQKQFLKARNQAAAVNDDNVEDRNMSVVKDPIRVRGKGCSDMLRCDGGVRKRRPRCSSCRREGHNKTTCPLRNSLGNIAGGSQTRPVASVELGSREWNQCESYVDHEGQMSEFSDGCELFSDDDEQEMEQVSETESESFERSRDNMEDDFLD. 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02645 834 Pfam FAR1 DNA-binding domain 94 180 IPR004330 -
Seca3g02645 834 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 654 IPR031052 GO:0006355
Seca3g02645 834 MobiDBLite consensus disorder prediction 816 834 - -
Seca3g02645 834 Pfam SWIM zinc finger 584 609 IPR007527 GO:0008270
Seca3g02645 834 SMART 26again6 588 615 IPR006564 GO:0008270
Seca3g02645 834 Pfam MULE transposase domain 300 394 IPR018289 -
Seca3g02645 834 MobiDBLite consensus disorder prediction 1 50 - -
Seca3g02645 834 MobiDBLite consensus disorder prediction 802 834 - -
Seca3g02645 834 ProSiteProfiles Zinc finger SWIM-type profile. 565 613 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02645 Seca-Chr3 47393708 47397907 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02645 MULE 1e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02645 - - tpra:123913749 669.463