Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02642 ATGTCATCATCCTCATCGAATTCTTCTCCGTGTGCAGCGTGTAAGATTCAGCGGAGGAAGTGCACAGAGGAATGCGTTTTTGCGCCGTATTTTCCGCCGGACAACCCCCAAAGGTTCGCTTACGTGCACAAAGTGTTTGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAGGTGAACACTGTACAACGTGAAGACGCTGTCAAATCACTAGCCTATGAAGCTGAGGCAAGGCTAAGGGACCCTGTTTATGGTTGTGTGGGACTCATCTCACTCCTTCAACACAAACTCAAACACTTGCAGAATGAACTTAACAATGCCAAGAAGGAACTTGCTTCCTACATTGGACCCCATGCTATGCTTCCTCAACCACCCCGAAATCCTTCTCTCTTTCCTTTCAACACCAACCCTATCACTACTACTACTCCTCAGCCTCATGATTTTTTCGCCTTCAACCATGATGGAGCTTCCACTTCCCAAGTCACTGCACTCCCTCTCTGTCCTCCTGATCACTCTTTTCCCAATCAATTAATGTTTTCACCGCAACCACACCACTCCTTCTTGTCCCAGAAGCTTTTCAAGTCTGAGAGCCAGAACCACGCAGAGTGTAGGACCACTGCTCCATCTGATTGA 630 0.4841 MSSSSSNSSPCAACKIQRRKCTEECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEVNTVQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLKHLQNELNNAKKELASYIGPHAMLPQPPRNPSLFPFNTNPITTTTPQPHDFFAFNHDGASTSQVTALPLCPPDHSFPNQLMFSPQPHHSFLSQKLFKSESQNHAECRTTAPSD. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02642 209 Coils Coil 89 109 - -
Seca3g02642 209 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca3g02642 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 166 - -
Seca3g02642 209 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02642 Seca-Chr3 47338179 47340424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02642 5 121 AS2 family AT5G66870 78.632 5.44e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g02642 LOB 6.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02642 - - gmx:100812543 241.121