Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02615 ATGCCTCGCCAACTTCCGCCACAGCCGCCGCAGCCGCCGCAGCCTATGCCTGTGGACGCCAAAATCTGGCGAGCATGCGCCGGCGCCTCCGTTCAAATCCCTGCCGTCAATTCTAGGGTTTACTACTTCCCTCAGGGCCACATGGACCAAGCCTCTTCCCCTCCCCAGAACCTTTCTCCTCTCCTACTTTCCAGGCCCTTCATCCTCTGTCAAATAACCGCCGTTCAATTCCTCGCTGATCCACTCACCGACGAGGTCTTCGCCAAACTCCAACTCAAACCTCTCACCGATTTCTCCGACGCTTTTCCCCGCCCTTCTCTTCCCACCGACGACAACAACAAGGTCTTGTCGTTCGTCAAGATTCTGACGCCTTCTGACGCCAACAACGGCGGCGGATTCTCCGTTCCGAGGTTCTGCGCCGATTCCATCTTCCCGGCTCTCAACTTCGAGGACGAACCGCCGGTGCAGACCTTGTCCATCACCGATGTCCACGGCGAGGAATGGCAATTCCGCCACATTTACCGCGGCACGCCGAGGAGGCACTTGCTCACCACCGGATGGAGCAAGTTCGTCAACAAAAAGAACCTCGTCGCTGGTGATTCCGTGGTTTTCATGAAAAACTCCACGGAGAAGATGTTCGTCGGGATCCGCCGTGCCACGCGGTTCGCTTTGGGCGGCGACGGGGCCAGCCGTTTCTTGCTCGGGGTGAGAAACAGGGCCCAGGAGGAGCACCAGCAGCAGGAAGAGAGGACCAAAAAAGAGGGGTTTTCGAGGAACGGGAAGGGGAAGTTGTCGCCGAAGTCGGTTGCGGAGGCAGCAGAATTGGCAGCACAGAACAAGCCATTCGAAGTTGTGTACTATCCGAAGGCTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGACTGTGGACGAAGCGATGAGGGTTGTGTGGAGTCCCGGAATGAGAGTCAAAATGTCTGTGGAGAATGATGAATCGTCCAGGATGACATGGTTTCAGGGTGCAGTCTGTTCAGTCTCTGTTACTGATAATGTCCCTTGGCGAGGTTCTCCTTGGCGCATGCTTCAGATTACGTGGGATGAACCTGAAGTGTTGCAGAATTCAAAGTGGGTCAGCCCTTGGCAGGTCGAACTTGTTTCTACCACACCCGCGCTTCATGCAGCATTTCCCCCTCTAAAAAAGTTCAGAGCTGCCCAGGGTTCTCGGGAGGGAGACCCCTTTCCTATGATTGGATTCACTAATTCAACAATGGGACACTTCAATCATACATTTAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTCTTTTCTATATCAAGTTTTTCCAACTTTCCAAGTGATAACCCTCGTCTGTGTATGGGTAATACCTTTGTGAACAACACAGTGCCAAGGTTGAAAACTGTGTCAACAGAGCTAAATGTTGGCAGTTCTCAATCTGATGACTTGTCCCCAGATAGCCAGAGTAGTTTGCATTCCTTTGGGGCAGAATATGTTGGGAACCACAACTGCAGCTCAACAAAGCCCGAGTCTGTTTCATTTCAGTTATTTGGTACAGTTATTCAGACAAAACTGCCTGTTGAAAATGGTTTACATGGTACTGGGTGCACAGGAGATGATAGCAGTAAGGGCTGTAATGAACATGAAGGCATTGACAATACACTGGATGGTTCTTTGTCATACTCAAAATTGCTTGACAGGCTTGATGAACAATGCCCAAGATCCTCGGCAGTCAAGGCTTGTTATTTGTGA 1761 0.5185 MPRQLPPQPPQPPQPMPVDAKIWRACAGASVQIPAVNSRVYYFPQGHMDQASSPPQNLSPLLLSRPFILCQITAVQFLADPLTDEVFAKLQLKPLTDFSDAFPRPSLPTDDNNKVLSFVKILTPSDANNGGGFSVPRFCADSIFPALNFEDEPPVQTLSITDVHGEEWQFRHIYRGTPRRHLLTTGWSKFVNKKNLVAGDSVVFMKNSTEKMFVGIRRATRFALGGDGASRFLLGVRNRAQEEHQQQEERTKKEGFSRNGKGKLSPKSVAEAAELAAQNKPFEVVYYPKAGWSDFVVKAETVDEAMRVVWSPGMRVKMSVENDESSRMTWFQGAVCSVSVTDNVPWRGSPWRMLQITWDEPEVLQNSKWVSPWQVELVSTTPALHAAFPPLKKFRAAQGSREGDPFPMIGFTNSTMGHFNHTFSYGTFPAGMQGARHDLFSISSFSNFPSDNPRLCMGNTFVNNTVPRLKTVSTELNVGSSQSDDLSPDSQSSLHSFGAEYVGNHNCSSTKPESVSFQLFGTVIQTKLPVENGLHGTGCTGDDSSKGCNEHEGIDNTLDGSLSYSKLLDRLDEQCPRSSAVKACYL. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02615 586 Gene3D - 310 383 - -
Seca3g02615 586 CDD B3_DNA 117 218 IPR003340 GO:0003677
Seca3g02615 586 FunFam Auxin response factor 116 220 - -
Seca3g02615 586 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g02615 586 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 537 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g02615 586 MobiDBLite consensus disorder prediction 240 260 - -
Seca3g02615 586 MobiDBLite consensus disorder prediction 240 265 - -
Seca3g02615 586 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Seca3g02615 586 Gene3D - 115 220 IPR015300 -
Seca3g02615 586 SUPERFAMILY DNA-binding pseudobarrel domain 110 222 IPR015300 -
Seca3g02615 586 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Seca3g02615 586 SMART B3_2 118 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02615 Seca-Chr3 46929916 46934163 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02615 18 565 B3 DNA Binding Superfamily AT1G77850 49.296 4.20e-172 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g02615 B3 6.4e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02615 - - aprc:113852457 705.286