Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02612 ATGCCTCGCCAACTTACGCCACAGCCGCCGCGGCGGAAGCCGGAGAAGCCTAGCCCTTTGGACGCCAAAATCTGGCGAGCATGCGCCGGCACCTCCGTTCAAATCCCTGTCGTCAATTCTAGGGTTTACTACTTTCCTCAGGGCCACATGGACCAAGCCTCTTCCCCTCCCCAGAACCTTTCTCCTCTCCTACTTTCCAGGCCCTTCATCCTCTGTCAAATAACCGCCGTTCAATTCCTCGCTGATCCACTCACCGACGAGGTCTTCGCCAAACTCCAACTCAAACCTCTCACTAAATTCTCCGCCGCTTTGCCTCCTCCCCCCGACGACAACAACAACAAGGTCATGTCCTACGCCAAGATTCTGACCCCTTCCGACGCCAACAACGGCGGCGGATTCTCCGTTCCGAGGTGTTGCGCCGATTCCATCTTCCCGACGCTCAATTACGAGGACGATCATCCTGTGCAGACCTTGTCCATCACCGATGTCCACGGCGAGGAATGGCAGTTCCGCCACATTTACCGCGGCACGCCGAAGAGGCATTTGCTCACCACCGGGTGGAGCACGTTCGTCAACACCAAGAATATCGTCGCTGGAGATTCCGTGGTTTTCATGAAGAACTCCTCGGAGAAGATGTTCGTGGGGATCCGCCGCGCCACGCGGTTTGCATTGGGCGGCGACGTTGCCAGGCGTTTCTTTCTGGGGGTGAGAAACAGGGTCCAGGAGGAGAACCAGCAGCAGGAAGAGAGGACGAACAAAGAGGTGTTTTCAAGGAATGGGAAGGGGAAGTTGTCGCCGAAGTCGGTTGCGGAGGCAGCAGAATTGGCAGCACAGAACAAGCCATTCGAAGTTGTGTACTATCCGAAGGCTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGACTGTTGACAAAGCAATGATGGTTCCGTGGAGTCCCGGAATAAGAGTCAAAATGGCTGTGGAGGCAGGTGATTTGACCAAGATGACATGGTTTCAGGGTGTAGTTTGTTCGGTCTCTGTTCCTCCTGATAATGTCCCTTGGCGAGGTTCTCCTTGGCGCATGCTTCAGATGTCTCTACACTGCTTGGTTGAGTTAGAAGAGATTACATGGGATGGACCTGAAGTGTTGCAGAATTCAAAGTGGGTCAGCCCTTGGCAGGTGGAACTTATTTCCACCACACATGAGCTTCCTACAGCATTTCCCCCACTAAAAAAGTTTAGAGCTGCTCAGTGTTCTGGGGAGGAAGACCCCTTTTCTATGACAGGATTCACTAATTCAACAATGGGACACTTCAATCAAACATTGTTTGGTTATGGTCCTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTCTTTTCTGCATCAAGTTTTTCCAACTTTCCAAGTGATAAGTTTCGTCTGTGTATGGGTTATTCCTCTGTGAACAACACAGTGCCAGGGTTGAAAGCTGTGTCAACAGAGCTAAATGTTGGCGGTTTTCAATCTGACGACTTGACCCCCCATAGCCAGAGTAGTTTGCATTCCTCTGGCACAGAATATGTTGGGAACCACAACTGCAGCTCAACAAAACCCGGGTCTGTTTCATTTCAGTTATTTGGTACAGTTATTGAGACAAATCGGCTTGTTGAAAATGGTTCGCATAATACTAGGTGCACAGGAGATAATAGCAGCAAGGGCTGTAATGAAAATGAAGGCATTGACAATACACGGGATGATACCGGCCTTTATTAG 1734 0.5115 MPRQLTPQPPRRKPEKPSPLDAKIWRACAGTSVQIPVVNSRVYYFPQGHMDQASSPPQNLSPLLLSRPFILCQITAVQFLADPLTDEVFAKLQLKPLTKFSAALPPPPDDNNNKVMSYAKILTPSDANNGGGFSVPRCCADSIFPTLNYEDDHPVQTLSITDVHGEEWQFRHIYRGTPKRHLLTTGWSTFVNTKNIVAGDSVVFMKNSSEKMFVGIRRATRFALGGDVARRFFLGVRNRVQEENQQQEERTNKEVFSRNGKGKLSPKSVAEAAELAAQNKPFEVVYYPKAGWSDFVVKAETVDKAMMVPWSPGIRVKMAVEAGDLTKMTWFQGVVCSVSVPPDNVPWRGSPWRMLQMSLHCLVELEEITWDGPEVLQNSKWVSPWQVELISTTHELPTAFPPLKKFRAAQCSGEEDPFSMTGFTNSTMGHFNQTLFGYGPFPAGMQGARHDLFSASSFSNFPSDKFRLCMGYSSVNNTVPGLKAVSTELNVGGFQSDDLTPHSQSSLHSSGTEYVGNHNCSSTKPGSVSFQLFGTVIETNRLVENGSHNTRCTGDNSSKGCNENEGIDNTRDDTGLY. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02612 577 FunFam Auxin response factor 116 220 - -
Seca3g02612 577 CDD B3_DNA 117 218 IPR003340 GO:0003677
Seca3g02612 577 Gene3D - 115 220 IPR015300 -
Seca3g02612 577 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 555 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g02612 577 SMART B3_2 118 220 IPR003340 GO:0003677
Seca3g02612 577 MobiDBLite consensus disorder prediction 546 564 - -
Seca3g02612 577 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Seca3g02612 577 Gene3D - 310 395 - -
Seca3g02612 577 Pfam Auxin response factor 272 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g02612 577 MobiDBLite consensus disorder prediction 546 577 - -
Seca3g02612 577 SUPERFAMILY DNA-binding pseudobarrel domain 111 223 IPR015300 -
Seca3g02612 577 MobiDBLite consensus disorder prediction 243 264 - -
Seca3g02612 577 Pfam B3 DNA binding domain 119 219 IPR003340 GO:0003677
Seca3g02612 577 MobiDBLite consensus disorder prediction 243 257 - -
Seca3g02612 577 MobiDBLite consensus disorder prediction 497 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02612 Seca-Chr3 46889622 46892377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02612 20 565 B3 DNA Binding Superfamily AT1G77850 44.444 9.89e-155 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g02612 B3 6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02612 - - aprc:113852457 663.299