Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02606 ATGCTTTCGTTCTTGTGTACCTTGTTATTGCCGGCGATGACCGGGGGCCGATGTCTGAGCCTGAAGAACATGGCGGAAGAAGAGGGTGCCACCGCCGAGGAGAGGCCGTGTCCGGCCAATTTTCCGGCGGAATTTCCCGACGATTCCGCCGCGTTTAAAATTGATTACTTCTCGCAGGCGAGGAAAGCGCTCAGCGAGCGCTCGCCTTTCGATGTTGCCGAAGAAACGTCGACTTCTGCTGCGGTTACTCTGCCGAGTGGGTTGGCGAGTTTGTTGAACCGTCACGCCGATAACCGGAGGCGCCACAAGAAGTCTCATTCTGGCGGTGGCGAAAAGAAGAAGAAGAAATCATCGTCTAGGGCGAACGAGAAGTCGCGGGCTTCCAACATTTGGGTTGAGACGGAGGAGTACTTTAGGGACTTAACCTTGGCTGATATCGACACCTTGTTTGAGCTTTCTTCGTCTTCTAGTTTAGCTTCTCGGGAGTGTTTTTCGATTCCGCTTTTGAGCAATGCTCCAAGGTTCAATGTAGTTAGTACTAGTTGTGAGGATGAAATAAAGCGTACTAGTTATGAGGATGAAAAGATGCGTACTAGTTGTGAGGATGAAAAGAAACCTGGTCTAAATTTCAATGTAGCTAGTAGTGAGGATGAAAAGAAGGCCGGTGAAGACAAGAAACCTGGTCTAAATTTCAATGTAGCTAGTAGTGAGGATGAAGAGAAGGCCGGTGAAAACGTGAAAAATGAGGAAGGTTTCTTGGGAATTGAGTCAATTGACAATGTTACTGCTGAAAGAGCCTTGCCTCAGGATGACAAGGATGGCGATATTTCTGATTCTTCTATTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGATTTCTTTAACTTCTGAGCGCCCTTCCAAGAAAAGGAAGCTTTTGGGTGGAGATGCTGGTTTGGAGAAGGTTTTAATGACTAGTCCTTGTGATGGGGACCAACCGTTTTGTCATTTTTGCGGCAGGGGAGACACTGGCACTGACAGAAATTCCAATCGGTTAATCGTCTGTGTTTCTTGTAAAGTTGCCGTTCATCAGAAGTGCTATGGTGTGCATGATGATGTAGATGAATCTTGGTTGTGTTCTTGGTGTAAGCTTAAGGGTGATGTTGATGACTCAGTGAACCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCTTTAAAACCAGTTAACAGCAGTGTGGAAGGTGGTGGCTCTGCTCAGTTTGTGCACTTGTTTTGTTGTTTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGGCGTCAAGGAAACCCGGAGAAGATTAGTGTGTAATGTTTGCAAAGTGAAGTGTGGTGCATGTGTTCGGTGTAGTCATGGAACCTGCAGAACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACACAGAATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAACAGAAGCATCTTGTTACTGGAAGGCTCTAATGCAGTTGGCAGTGAATGTTCAGAAGCCAATGACCTTCCGGTGATATTGCCAGTAAGTAGCGAACACAGTGTAAAAATTGGTTGTGGCAATGGAGTGTTGGTGTCTGATAGCAATCCAGACAAATTGAACCATAATGATGAACCACCAGATGGAGGATTGTCTGATTGCAGGTTCGGTGCTCACAATATGTTGGAATGTGGTCCTGTGCCCCAACATAATAATGGAGTGGTAGGGAGAACCAATGAGAATATCGATACGTCTGACTCTCTCAGTTTTGCTCTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGTAGAAGATGTAGCATTGGAGATTGGCATTTCACCAGATATATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTGCGACACAAAATAGTTAATTGGCTAAAAGCCCATGTATATACTAGTGCATTTCAGAAAGGTTTAAAAGTCAAATTCAAATCAGCCAATGCATCCAAGGATGAAAGTGGAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCTGGTTTGCTGGATCCTGTTGCAGTTAAGTCAGTACCACCTAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGTGTTACTAATGAGAGTGGGATGCCGATAGACAAGTTCAGAGTAGGTCAGCTCGACTGTGAAAATCCAGGAAGCTCCAATGAAGCATCCATTCCTGATGCCACTGAAATGAAAGTAACCAAGTCTGAGGATACATTTCATGAAGTTCAAGGCAATGATGATGAACCGTACAAACCCAGCTTATCTGGATCCATTTCAGAAGAGAAGTCTACTGCTTGTTTGCAGAATGCTTCTATGCTTTATGATCAAAGCTGTCCTGCTCATTCTGCTTCACAACCACCTGATTCTGGTTTCATAAAGGTGGAAGCAATCTCTAATTACATTCACCCATACATCAACAAGAAATTGGTGCAGTTTTGTGGTGGGTTGCCCTTGGAGGACAATATAGGTTCAAGTGATAAGGGAAATTCTTCTTTGGTTGAACCCTCTGGGTCTAGTGGCTGTTCAGGTAGCCACAATCAGCAATTAACTTGCATTGACGATTCCAAGTCTGATCAAGTAAAGATGGATCAGTTGTTTAGGGATGAAAAATTGGGACTTTTGGAATTTTCTCCGGAAGATGAATTGGAGGGGGAACTTATATATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCTTACTGATAACTTAATCTACAATGTTGCCAAGAGTTTGCCACAAGAGATTGATAAAGCACATCAGCAAAGATGGGATGCTGTGAATGTTAATCAATATCTACGTAATCTTAGGGAGGCAAAAAAGCAGGGCAGAAAGGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCAGCAACTGCTGCAGCAGCAGCATCTTCTAGGGTTTCTTCTTTCCGCAAAGACACCTTAGATGAATCTGTGCAACAGGAGAATTTGTTAAAGTCGGATACTTCAAATGGGCGGACTGGTGCATTTTCTCAGCCAATGCCACGAGCCAAAGAGACACTTTCAAAAGTAGCTGTCACAAGAGCTTCATCAGAGAAATATATGGATTTTTGCCTGCCAACCTCAGATTTTTCTAAGGAGCAACGCAAATCATGTGATATCTGCAGACGATTTGAGACTATGATAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTTGGATTGCTATCGTATTGTGAAAGAAACAACGGGTCCATGGTACTGTGAATTATGTGAAGCTTTATCTTCTAGAAGTTCTGGGGCATCTGCTATAAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTTTGTGGTGGTACTAGTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTTTGTGCCGAGTGGGTTTTTGAGTCGACATTCAGAAGAGGACAAATAAATGCTATTGAAGGAATGGAGACTCTGCCAAAAGGCGTTGATATTTGTTGCATCTGCCGCCGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCAGACTACATTCCATCCATCCTGTGCTAGAAGTGCTGGATTGTACATGAATGTGAGGACTGTTGGTGGCAAGGTGCAACACAGGGCTTATTGTGAAAAGCATAGTGTGGAGCAGAGAGCAAAGGCTGAAAGTCAAAAACATGGAATTGAAGAGCTAAGAAGTATCAAGCAAATTAGGGTTGAGCTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATCAAGCGGGAATTGATTCTGTGCTCACATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTGGTTCATAGTCCTTTTATCCTTCCAGATGGTAGTTCTGAATCAGCTACAACATCCCTTAAAGCGAACACAGAGGGTTACAGATCATGCAATGAAGCACTCCAAAGATCAGATGACGTAACTGTGGACAGCTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCTGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCACTACAACCACAAGATTCCAGAGAGAATGCAATTTTCTGGCAAACAGATTCCTCATAGAGCTGCTACATCACGTAATATTTCGGATGAGAGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACATTTGGAAAGGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAATGAGGATGTATATGCCAGTGGACCAGTGGAACATGATGGGTAG 4494 0.4335 MLSFLCTLLLPAMTGGRCLSLKNMAEEEGATAEERPCPANFPAEFPDDSAAFKIDYFSQARKALSERSPFDVAEETSTSAAVTLPSGLASLLNRHADNRRRHKKSHSGGGEKKKKKSSSRANEKSRASNIWVETEEYFRDLTLADIDTLFELSSSSSLASRECFSIPLLSNAPRFNVVSTSCEDEIKRTSYEDEKMRTSCEDEKKPGLNFNVASSEDEKKAGEDKKPGLNFNVASSEDEEKAGENVKNEEGFLGIESIDNVTAERALPQDDKDGDISDSSISLEWFLGCRNKISLTSERPSKKRKLLGGDAGLEKVLMTSPCDGDQPFCHFCGRGDTGTDRNSNRLIVCVSCKVAVHQKCYGVHDDVDESWLCSWCKLKGDVDDSVNPCVLCPKKGGALKPVNSSVEGGGSAQFVHLFCCLWMPEVYIDDLKKMEPVMNVGGVKETRRRLVCNVCKVKCGACVRCSHGTCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLQENRSILLLEGSNAVGSECSEANDLPVILPVSSEHSVKIGCGNGVLVSDSNPDKLNHNDEPPDGGLSDCRFGAHNMLECGPVPQHNNGVVGRTNENIDTSDSLSFALVLKKLIDRGKVDVEDVALEIGISPDILTANTNEAYMAPDVRHKIVNWLKAHVYTSAFQKGLKVKFKSANASKDESGATDGSDTLPISDSGLLDPVAVKSVPPRRRTISNIRILKDNKVICSSEGVTNESGMPIDKFRVGQLDCENPGSSNEASIPDATEMKVTKSEDTFHEVQGNDDEPYKPSLSGSISEEKSTACLQNASMLYDQSCPAHSASQPPDSGFIKVEAISNYIHPYINKKLVQFCGGLPLEDNIGSSDKGNSSLVEPSGSSGCSGSHNQQLTCIDDSKSDQVKMDQLFRDEKLGLLEFSPEDELEGELIYFQHRLLQNAVAKKRLTDNLIYNVAKSLPQEIDKAHQQRWDAVNVNQYLRNLREAKKQGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDTLDESVQQENLLKSDTSNGRTGAFSQPMPRAKETLSKVAVTRASSEKYMDFCLPTSDFSKEQRKSCDICRRFETMINPILVCSGCKVAVHLDCYRIVKETTGPWYCELCEALSSRSSGASAINFWEKPYFVAECALCGGTSGAFRKSSDGQWVHAFCAEWVFESTFRRGQINAIEGMETLPKGVDICCICRRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTVGGKVQHRAYCEKHSVEQRAKAESQKHGIEELRSIKQIRVELERLRLLCERIVKREKIKRELILCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLKANTEGYRSCNEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPERMQFSGKQIPHRAATSRNISDESGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDVYASGPVEHDG. 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02606 1497 ProSitePatterns Zinc finger PHD-type signature. 1090 1133 IPR019786 -
Seca3g02606 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1155 1266 IPR013083 -
Seca3g02606 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 509 IPR013083 -
Seca3g02606 1497 Coils Coil 1284 1304 - -
Seca3g02606 1497 Coils Coil 982 1002 - -
Seca3g02606 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1079 1139 IPR013083 -
Seca3g02606 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 381 IPR013083 -
Seca3g02606 1497 Pfam PHD-zinc-finger like domain 388 506 - -
Seca3g02606 1497 Pfam PHD-zinc-finger like domain 1157 1263 - -
Seca3g02606 1497 SUPERFAMILY FYVE/PHD zinc finger 319 378 IPR011011 -
Seca3g02606 1497 MobiDBLite consensus disorder prediction 871 891 - -
Seca3g02606 1497 MobiDBLite consensus disorder prediction 197 248 - -
Seca3g02606 1497 MobiDBLite consensus disorder prediction 96 111 - -
Seca3g02606 1497 ProSiteProfiles Zinc finger PHD-type profile. 326 379 IPR019787 -
Seca3g02606 1497 MobiDBLite consensus disorder prediction 93 126 - -
Seca3g02606 1497 PANTHER PHD FINGER PROTEINS 103 1027 - -
Seca3g02606 1497 ProSiteProfiles Extended PHD (ePHD) domain profile. 386 507 IPR034732 -
Seca3g02606 1497 ProSiteProfiles Extended PHD (ePHD) domain profile. 1155 1264 IPR034732 -
Seca3g02606 1497 ProSitePatterns Zinc finger PHD-type signature. 329 376 IPR019786 -
Seca3g02606 1497 MobiDBLite consensus disorder prediction 1418 1443 - -
Seca3g02606 1497 ProSiteProfiles Zinc finger PHD-type profile. 1087 1136 IPR019787 -
Seca3g02606 1497 SMART PHD_3 451 507 IPR001965 -
Seca3g02606 1497 SMART PHD_3 1210 1264 IPR001965 -
Seca3g02606 1497 SMART PHD_3 328 377 IPR001965 -
Seca3g02606 1497 SMART PHD_3 1089 1134 IPR001965 -
Seca3g02606 1497 Pfam PHD-finger 344 377 - -
Seca3g02606 1497 Pfam PHD-finger 1101 1134 - -
Seca3g02606 1497 SUPERFAMILY FYVE/PHD zinc finger 1084 1135 IPR011011 -
Seca3g02606 1497 CDD ePHD 1158 1263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02606 Seca-Chr3 46811027 46827092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02606 344 513 C2H2 Transcription Factor Family AT3G14740 29.480 2.05e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g02606 zf-HC5HC2H_2 6.1e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02606 - - gmx:100775631 2196.01