Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02590 ATGGGGGAAGTGGTGACAAGTGCTGAGAGGCTAACGGGAGCGGAGGAGGAGAGAGTGGAGATGGAGAAGGAAGAGGAAGGGAGTGGAACTGGGAACAGAGGTGAATTGAAAGGGTTGATGAGGTGGGAGAAGTTCTTGCCGAGGATGATTTTGAGAGTGCTCTTGGTTGAAGCCGATGACTCCACCAGGCAGATTATAGCAGCGCTTCTCAGGAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGATTGAAGGCATGGGAAATACTAAAGGGAAGACCACGCAATATCGATCTAATACTGACAGAAGTGGATTTGCCATCCATATCTGGATATGCACTTCTCACGTTAATTATGGAGCATGAGATTTGCAAAAACATCCCTGTCATAATGATGTCCTCACATGATTCAATTAGCACGGTATACAAATGCATGTTGAGAGGTTCCGCGGACTATCTGGTTAAGCCCATTAGAAGAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCATCAACTGCGGGTGTAAATGGCCCTCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCTGAAAACAATGCTGCCAGTAATCGTTCAAGTGGTGATGCTACTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCTGACATGGAAGCTGAGAGTGGCCCTATTGATAACATGCAAGAATTTTCTCTACTAAAAAGTGTTCAGGCATATCCAAGTGGAACAAAGACTCAAGAGGTTGAAATTCGTTTAGGCCAGACATTGATCATTCATGATGGTCATGCTGGAGGATCAACTGTGGCTATCTGCAAAAATGATGAGACAAGCATTGCTACTGGCAAGGATGGTGATCCAGAAAATTTTCGAAGTTCTAGCGTCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCAATCTGCAGTCTCAAAAGTTCCACAGTTGATTGCACAGGAAAGTTTGACTTTTCTCCACAATTGGATCTTTCCCTGAGAAGATCTCATCCAAGCAACTTTGAGAAGGAAGTCACTGAAGAAAGGAACACCCTCATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGAAATTGCAAGCCCCACCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGAGAACAGAAAACAAATTGTGAGAAAATTGTCTCCCATGTCGCAGCTGGCTGCAACTCAGATAGTTCAACGCCTAGTATGCAAAGATGCATTATGTCTCCAGCTACACCCCAATCAAAAGAATCTGAACTTGGAACTTCACACTCACAGCAAGGGCATTCTCTCCCAATTCCTGTAAAAGGTGTAAGGTTCAATGATCTATGTGCAACTTATGGTTCTGTACTTCCTCCAGTCTTTCGTACACAGTCAGGTCCACCATCAATGCCAAGTCCAAGTTCAGTTATCTTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATCAAAGAAAATAGTACAGAACAGCTTTATGAACCTCATGGTCCAAATGGAAACACCACCCCAAACCACATTGTGTACAGACATGAGCACAAGTCAGAACATGCAGAGGATCGAGGACATATCTCTTCTGCAACTGATCAAAGTGTATCCAGCAGTTTCTGTAATGGAAATGCAAGCCATCTTAACAGCATGGGTTATGGAAGCAATTGTGGAAGTAGCAGTAATGTTGATCAAGTAGCTACTGTCAGGCCAGCCTCAGATGGTAAGAATGAAGACCCCACAAACAATGGATATTCTCATCGGTCAATCCAAAGAGAAGCAGCACTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTATGAGAAGAAGGTTAGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTGCATCCTGATCCTCTTTCTGCAGAAAAGGATGATCAGTAG 2055 0.4307 MGEVVTSAERLTGAEEERVEMEKEEEGSGTGNRGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPRNIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSHDSISTVYKCMLRGSADYLVKPIRRNELRNLWQHVWRRQSSTAGVNGPQDESVAQQKVEATAENNAASNRSSGDATCIQRNKELIEKGSDAQSSCTKPDMEAESGPIDNMQEFSLLKSVQAYPSGTKTQEVEIRLGQTLIIHDGHAGGSTVAICKNDETSIATGKDGDPENFRSSSVSGEAHDNHYVQINSSKEAIDLIGAFHTHPICSLKSSTVDCTGKFDFSPQLDLSLRRSHPSNFEKEVTEERNTLMHSNASAFKRYTNRKLQAPPAVLINFSDQQREQKTNCEKIVSHVAAGCNSDSSTPSMQRCIMSPATPQSKESELGTSHSQQGHSLPIPVKGVRFNDLCATYGSVLPPVFRTQSGPPSMPSPSSVIFLEPNFQVNAFYQSNIKENSTEQLYEPHGPNGNTTPNHIVYRHEHKSEHAEDRGHISSATDQSVSSSFCNGNASHLNSMGYGSNCGSSSNVDQVATVRPASDGKNEDPTNNGYSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLSAEKDDQ. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02590 684 MobiDBLite consensus disorder prediction 652 668 - -
Seca3g02590 684 CDD psREC_PRR 53 156 - -
Seca3g02590 684 MobiDBLite consensus disorder prediction 10 34 - -
Seca3g02590 684 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g02590 684 SUPERFAMILY CheY-like 51 176 IPR011006 -
Seca3g02590 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 52 216 IPR045279 GO:0009736
Seca3g02590 684 SMART REC_2 51 166 IPR001789 GO:0000160
Seca3g02590 684 ProSiteProfiles CCT domain profile. 629 671 IPR010402 GO:0005515
Seca3g02590 684 ProSiteProfiles Response regulatory domain profile. 52 170 IPR001789 GO:0000160
Seca3g02590 684 MobiDBLite consensus disorder prediction 652 684 - -
Seca3g02590 684 MobiDBLite consensus disorder prediction 437 468 - -
Seca3g02590 684 MobiDBLite consensus disorder prediction 174 209 - -
Seca3g02590 684 Pfam CCT motif 629 671 IPR010402 GO:0005515
Seca3g02590 684 Pfam Response regulator receiver domain 53 164 IPR001789 GO:0000160
Seca3g02590 684 Gene3D - 49 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02590 Seca-Chr3 46393257 46397828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02590 328 673 Response Regulator Gene Family AT5G24470 31.302 1.13e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca3g02590 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02590 K12130 - gmx:100777119 1088.56