Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02587 ATGTTTTGTTTTGTTTCAGCGAAGCTCGTTTCTTTTTTTCAAGAATTAGGGATTGGTTTTGAGGAAACACAAGTGTTCTTGCTCAATAACCCTGAACTTAGTTTAGTTTCAGTAGATTCATTGCATGCTAGGGTCCTTTCTTTACAGTCTTTGGGGTTGGATAGGGTTACCATGTATCAATTGGTTACAAAGCGCCCAACTGTGCTAACAGATAAGGAAATTGTTCCCTTGTTAAGCTTTTTGAGAAATGAACTAGAAGGACAGCTTGAGCAAGCACAGATAGAGCGCCTTTTATCTCTTGAACCAAAATTCTTGGTGGATTTTCCTCAGAAGGTTAAACTGCTTGTTGAAAGAGGTGTTCCTGCTGATAAAATTGTACATGTGCTCAACAAAGTTCATTTGCAAAAGGCACTGTGTGGCAAGTCCATGGATGAAATTGACAGATTTATAACTTTCTTGGAACCCTTTGGTAGCATTAGTTTGATCCTGAGGCTCCCTACAATTCTCAAGTTTGATTTAGACAAGCAGCTCATTCCAAGAATCAAAGTACTGGTGGAACTTAGTAATGGAGATAAGTTTGGTGTTGCCAAAGTGCTCCTTAGATACCCTGCAATCTTGAACTATACTGTGAAACATGTGGAGGGACATGTACAGTTCTTGAGGTCTTTTGCAAATCTTGATGACAAACAAATATTTAGAATAATGTCAATATTTCCAGCTGTTGTCACTATTAGCAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCATGGAATGTGGGTTAGATTCAGATGATATTTTCAAGTTCTTGACTAAAGCACCCTTATTTCTAGGTCATTCATTCCATGACAACATTGTCTATAAGCTTGTGTTTCTTGTCAAAATTGGATATAAATATAAGACAAAAGACTTGGCAATGGCAATTGGTATTTCTACTAGGACAAGCTGTGAGAACATGCAAAAGGTGATAAGTCTATTCTTGAATTATGGGTTTTCATGTGAAGACATTATTGCTATGAGTAAGAAGCAGCCACAGATACTGCAGTATAATCATACTTCTTTAGAGACGAAGATGAACTACTTGATAGAGGACATGGATCGGGACATTAAGGAGTTATTGGTTTTTCCTGCATTTCTTGGCTACAAGTTGGATGACAGAATTAAGCCTAGATATGAGATAAGGAAGAGTACAAAGGGGGGACAAATGTCTCTCAATAAGCTTCTAACTGTTTCAAGTGAGATGTTTACTGACAAGAGAAAAAAGGCCTCTGCTCTAGCATCTGAATCGTGA 1293 0.3782 MFCFVSAKLVSFFQELGIGFEETQVFLLNNPELSLVSVDSLHARVLSLQSLGLDRVTMYQLVTKRPTVLTDKEIVPLLSFLRNELEGQLEQAQIERLLSLEPKFLVDFPQKVKLLVERGVPADKIVHVLNKVHLQKALCGKSMDEIDRFITFLEPFGSISLILRLPTILKFDLDKQLIPRIKVLVELSNGDKFGVAKVLLRYPAILNYTVKHVEGHVQFLRSFANLDDKQIFRIMSIFPAVVTISRERKLRPRIQFLMECGLDSDDIFKFLTKAPLFLGHSFHDNIVYKLVFLVKIGYKYKTKDLAMAIGISTRTSCENMQKVISLFLNYGFSCEDIIAMSKKQPQILQYNHTSLETKMNYLIEDMDRDIKELLVFPAFLGYKLDDRIKPRYEIRKSTKGGQMSLNKLLTVSSEMFTDKRKKASALASES. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02587 430 Gene3D Transcription termination factor 3, mitochondrial 6 193 IPR038538 -
Seca3g02587 430 Gene3D Transcription termination factor 3, mitochondrial 194 426 IPR038538 -
Seca3g02587 430 PANTHER CGI-12 PROTEIN-RELATED 10 142 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 370 402 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 196 227 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 SMART mt_12 24 54 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 Pfam mTERF 315 416 IPR003690 GO:0003690|GO:0006355
Seca3g02587 430 Pfam mTERF 11 295 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02587 Seca-Chr3 46340379 46343774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g02587 mTERF 4.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02587 - - gmx:100799904 567.77