Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02577 ATGATGAATGAGAGTAGTGTGAGGTTACTGCCACTGGAGATAATAGCTGAAATACTCTCATGGTTACCGGTTGAGTCTATTCTACGCTTCAGCTGCGTTTGCAAGTCATGGTACTCACTCATCTCACACTCTCAATTCATCAACCTTCATCTTTCTCGCTCCCTCAAACTCAACCATGGCATGCTTATCTTTGAACAACCCCGTTACGAGCATGGAATGCTCTATCTGACACCCTTTTCCGGTGATGCCATTTCGAGCTACCCCTTGAGGATTCCCCTTCCCTTTCGAGAGGATCGTGTTCGCATGTGTCATTGCGATGGCTTGGTTTTCTTCACTGCAGCTTGGGCCAATGTCTGTGTGCTCTGGAACCCTTTACTGCGGAAGCAAAAGTCGTTGACTTTGCCGCGATTCGAGGGTCCTGGATTTCCGGGTAGTGTGATTTTGGTGGATTTTGGATTTGGGGTTGACATGGTCAGTGGTGACCATAAGATTGTTAGGCTTGTGCTTTATGCTGAATGGTATAAGGGTGACTATTTGAAGCATAATTTTTGGACCTCTGAAGTAAAGGTTTATTCTTTTTGTACAAATTCATGGAGAAGGGTTCCTGATTTGCCTTTCAATGATTTAAAGCTCTGTACTCCCTCAATTCATGTTAATGGTGCTCTACACTGGTTGGTTTGTGACAGGGATTCAAGTGAGTCTATCAGATTTGTTGTTGCTTTTGATCTTGCAAATGAAGAATTTCATAACCTTCTTGTTCCAAGTAATTTGGAACATGGGTCTCTCTCGAGTTTGGCTGTTCTGGATGGCTGTCTCTGCTTATGCCTTAATGATAATGCAAAGGCTCGTCAAGAGGTTTGGTTGATGAAGGAGTATGGAGTGCATGATTCTTGGTGTAGGCTTTTGGTTTTTGAAAATTGTGAATTGCCTTGCAGGCCATTAGTTTTATCCAAGACTAATGCCAAGGTGCTTGTGGAACAGGACTCTAAGAAACTGTTTTGGTATGATTACATCAATGAGGAAATTGAAAAGGTCATGATTAGTGATATGCCTTTTGCCTTTCAAACAACTGTCTCTGCTGGAAGCCTTCTTTTGCATGATGGAGATGCTGTTAAGGCTGCTCAATTATAG 1131 0.4279 MMNESSVRLLPLEIIAEILSWLPVESILRFSCVCKSWYSLISHSQFINLHLSRSLKLNHGMLIFEQPRYEHGMLYLTPFSGDAISSYPLRIPLPFREDRVRMCHCDGLVFFTAAWANVCVLWNPLLRKQKSLTLPRFEGPGFPGSVILVDFGFGVDMVSGDHKIVRLVLYAEWYKGDYLKHNFWTSEVKVYSFCTNSWRRVPDLPFNDLKLCTPSIHVNGALHWLVCDRDSSESIRFVVAFDLANEEFHNLLVPSNLEHGSLSSLAVLDGCLCLCLNDNAKARQEVWLMKEYGVHDSWCRLLVFENCELPCRPLVLSKTNAKVLVEQDSKKLFWYDYINEEIEKVMISDMPFAFQTTVSAGSLLLHDGDAVKAAQL. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02577 376 ProSiteProfiles F-box domain profile. 4 49 IPR001810 GO:0005515
Seca3g02577 376 PANTHER OS09G0372900 PROTEIN-RELATED 10 322 - -
Seca3g02577 376 SUPERFAMILY F-box domain 6 56 IPR036047 GO:0005515
Seca3g02577 376 CDD F-box_AtFBW1-like 8 46 - -
Seca3g02577 376 SMART fbox_2 10 50 IPR001810 GO:0005515
Seca3g02577 376 Pfam F-box associated 216 341 IPR006527 -
Seca3g02577 376 NCBIfam F-box protein interaction domain 102 328 IPR017451 -
Seca3g02577 376 Pfam F-box domain 10 43 IPR001810 GO:0005515
Seca3g02577 376 Gene3D - 1 46 - -
Seca3g02577 376 SUPERFAMILY Galactose oxidase, central domain 102 352 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02577 Seca-Chr3 46227152 46228282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02577 169 305 Carbohydrate Esterase AT1G25141 20.134 3.05e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02577 - - cave:132178594 216.853