Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02576 ATGAGTGCCGGCGAGTTGGGTTGCATCTACGCCACTTTGATCCTCCACGATGATGGGATCCCAATCACCGCGGAGAAGATCAACACTCTGTTAAAGGCCGCTAATGTCTCCGTAGAATCCTACTGGCCCAGCCTATTCGCCAAGCTCGCCCAGAACAGGAACGTCGACGACCTCATCTTGAACGCTGGCTCCGGTGGTGGTGCCGCCGTTGTCGCAGCTGCTCCTGCTGCCGGCGGTGGCGGTGCCGCTGCGGGAGGTGCTGCAGCACCTGCCGCCGAGGAAAAGAAGGAAGAACCCAAGGAAGAAAGTGATGATGACATGGGCTTTAGCTTGTTTGATTAG 342 0.576 MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVSVESYWPSLFAKLAQNRNVDDLILNAGSGGGAAVVAAAPAAGGGGAAAGGAAAPAAEEKKEEPKEESDDDMGFSLFD. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02576 113 MobiDBLite consensus disorder prediction 91 107 - -
Seca3g02576 113 FunFam 60S acidic ribosomal protein P1 1 63 - -
Seca3g02576 113 Pfam 60s Acidic ribosomal protein 22 112 - -
Seca3g02576 113 MobiDBLite consensus disorder prediction 77 113 - -
Seca3g02576 113 CDD Ribosomal_P1 5 61 - -
Seca3g02576 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca3g02576 113 Gene3D - 1 63 IPR038716 -
Seca3g02576 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02576 Seca-Chr3 46220583 46221779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02576 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.034 8.13e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02576 K02942 - ncol:116248277 128.642