Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02568 ATGAGTGGTCGATTTTCTCGCACAATTTATGTTGGCAACCTGCCATCTGATATAAGAGAATCCGAAATTGAAGATCTATTCTACAAGTATGGCCGTATCATGGATATTGAATTGAAGATTCCTCCTCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGTGGTGGTGGTGGCGGTGGTGGCGGCGGCGGCGGCAGTGGCCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCGTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGACGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGTACACCTTCATTTTGGTTTGCGTTTTGCTATGCCTTTATTAGATTGTTACCATCTACTATATTTACATTAGAGTAG 540 0.4574 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTPSFWFAFCYAFIRLLPSTIFTLE. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02568 179 Gene3D - 117 170 IPR012677 -
Seca3g02568 179 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 156 - -
Seca3g02568 179 MobiDBLite consensus disorder prediction 81 107 - -
Seca3g02568 179 FunFam serine/arginine-rich splicing factor SR34A-like 2 117 - -
Seca3g02568 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Seca3g02568 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 164 IPR000504 GO:0003723
Seca3g02568 179 CDD RRM1_SF2_plant_like 8 79 - -
Seca3g02568 179 Gene3D - 2 115 IPR012677 -
Seca3g02568 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Seca3g02568 179 SMART rrm1_1 119 179 IPR000504 GO:0003723
Seca3g02568 179 SMART rrm1_1 8 78 IPR000504 GO:0003723
Seca3g02568 179 SUPERFAMILY RNA-binding domain, RBD 6 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02568 Seca-Chr3 46177447 46180758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02568 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 1.71e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02568 K12890 - gmx:100786491 259.61