Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02565 ATGGCGGTTGCTGAGAATGCTGGGGCCAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCAAGTGAGGTGGAGAAATCGAAACCCAGAAGCGATCAGAATCTGAATAACGGTGTGTTCAACCACCAACACCAAGATAGAGTTCCGAGCACTATGTCAGTTCCCAATGGTAATTTCTACAAGGCTCAAATGGGTCAGATGCACGCAAATGGGGTCCAGAACCAGCAGTTGGTGGTGAAGAACAATGATGGATATGGGATTGATGGGGTCAGAAATGGGGAGAATGATGGGGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAACTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACAAACAATCATGGCTACTTAACTGGACCTGCTGCTGGGTTTGGCTACCCTAACAATTTTATACTACTCAATAATTATGGTAATGCTAACGCCCAAACTAACAGAAGGAGGAAGAATGGCTATAATCAAGGGAAACGTAGAGCGAATCATAAAATGGACATGGAGAAAAGAGAAGAGATGATTAGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACCGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCATTGAGAGTCCTACCTTCAAAAACTGCCATTGCACCTGTTAACCCAACATTTTTACCCAGGTCTGAAGATGAAAGAGAGATGTGCTCAAGAACAATTTACTGCACAAATATTGACAAGAAGGTAGTTTAG 918 0.4423 MAVAENAGAKIGSSSQNLDNSVVSSDSSEVEKSKPRSDQNLNNGVFNHQHQDRVPSTMSVPNGNFYKAQMGQMHANGVQNQQLVVKNNDGYGIDGVRNGENDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLTGPAAGFGYPNNFILLNNYGNANAQTNRRRKNGYNQGKRRANHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVV. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02565 305 SMART rrm1_1 197 267 IPR000504 GO:0003723
Seca3g02565 305 MobiDBLite consensus disorder prediction 9 28 - -
Seca3g02565 305 CDD RRM1_CID8_like 194 273 IPR034823 -
Seca3g02565 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 271 IPR000504 GO:0003723
Seca3g02565 305 MobiDBLite consensus disorder prediction 165 186 - -
Seca3g02565 305 Gene3D - 157 273 IPR012677 -
Seca3g02565 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 261 IPR000504 GO:0003723
Seca3g02565 305 Pfam Ataxin-2 C-terminal region 118 132 IPR009818 -
Seca3g02565 305 MobiDBLite consensus disorder prediction 37 57 - -
Seca3g02565 305 FunFam Polyadenylate-binding protein-interacting protein 11 160 273 - -
Seca3g02565 305 MobiDBLite consensus disorder prediction 1 57 - -
Seca3g02565 305 SUPERFAMILY RNA-binding domain, RBD 167 273 IPR035979 GO:0003676
Seca3g02565 305 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 116 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02565 Seca-Chr3 46118562 46123348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02565 186 266 Eukaryotic Initiation Factors Gene Family AT1G34140 34.940 1.17e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02565 - - gmx:106794116 499.59