Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02557 ATGATGACCCACATTCGACTTATTTTTCTCCTATGTTTCCTACTTTATCATTTTCATGGCATCACATGCAACAACAAAACAGATAGAGATGCCCTTGTTTCTTTCAAATCCCAAGTGACTGACCCAAACAATGCTCTATCCACCTGGTTGGTACATTCCAATCACTGCACCTGGTATGGTGTCACATGTTCCAAAGTTGGAAACAGAGTCCAATCTCTCACCCTACCAGGACTTGGTCTCTCTGGTAAATTAACCTCTCACCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCAACAACACATTTCATGGCCGAATTCCCCCACAGTTTGGCCATCTCTCACTTCTTAATCTCATTAACTTAGCTTACAACAATTTCAGTGGTAAACTTCCAAAGAAGTTGGGCCATCTGCATCGCCTTCAAAGTCTAGATTTTTCTGTCAACAATCTCACAGGTAAAGTCCCTCCAACATTTGGCAATCTCTTGTCTCTTAAGTATCTTGCATTGGCAGGGAACAAATTTGTGGGTGAGATTCCAAGTGAATTAGGTAATCTAAGCAATCTTTCCCATTTTCAACTCTCAGTGAACTATTTCACTGGCGAGTTTCCCACTTCTATCTTCAACATCTCTTCTTTAGTCTTCTTATCAGTGACACAAAACAATCTATCAGGCAAATTGCCACAAAATTTGGGCCTTGCCCTTCCAAATCTACAGACTCTAGCTCTGGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATATCCAATGCCTCACATCTTCAATATATTGATTTTGCAAACAATGAGTTCCATGGGTCTATACCTCTCTTCAACAACTTGAAAAATCTTACCCACCTTGCTCTCGGGAATAACTCTTTCTCTTCCACGACCTCATTGAATTATAAGTTCTTTGATTCCCTTAGAAACTCTAGTCAGTTGCAAGTGCTCATGATCTATGATAACCATTTGACTGGGGAACTTCCAAGTTCTGTTGCCAATTTGTCTACCAATCTCCAACATTTCTGTGTTGCTGATAATTGGCTAACTGGACGCATTCCTCGAGGGATAGAGAAAATTAAAAATCTCATATCCTTGTCTTTGGAGAACAATGATTTCACTGGAGAGTTACCATCAGAATTAGGAGCTCTAAATAACCTGCAGAGTCTTATGATACACAAAAATAGATTGTCTGGGGAAATTCCAGACATTTTTGGCAATTTAACAAATCTGTATAGTCTTGCAATGGGATATAACCAGTTCTCTGGTAGAATCCATAGAAGTATTGGACAATGCAAGAGATTGAGTTTTCTTAACCTGGGAATGAATAGGCTTGGTGGGACCATACCACAGGAGATTTTTCAGCTTTCTGGCTTAACAACCTTATACTTACAAGGTAACTCTCTACATGGCTCGCTTCCTCCCGAGATCAACACCATGGAGCAGCTTGAGACCATGGATATTTCCGACAATCAGCTGTCAGGATTCATTCCTAAGGAAATAGATGGTTGTTCTAGCTTGAAGGCACTTGTGATGGCAAGAAACAAATTCAGTGGCTCAATCCCAAAGAGTCTAGGGGACTTAGCATCCCTTGAGACTTTGGACCTATCATCAAACAATCTCACTGGTCCAATTCCTGAAAGTTTTGAAAACTATGAGTATATGGTGATGTTAAATTTATCTTTCAACCATTTGGAAGGGGCGGTTCCAATGAAAGGTGTTTTTCTGAACCTTAGCCGGGTTGATCTCAGAGGTAACAACAAACTATGTGGTCTTACCAATGAAATTGTGCAGAAATTGGGAGTCTTTCTCTGTGTTGCAGGTAAAAAGAAGAGAAACATTTTACTCCCTATCATATTAGCAGTTACAGGTGCTACTGCTTTGTTCATTTCAATGTTCTGTCTACTATGGTTGCTAATGTCCCGAAAGAGGAAATGCAACAAGCAGGGGGAAACTAATTTGTCATGTGCTCCTTTTAAGGGGTTGCCTCAAAATATATCATATGGAGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGGTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACCCTTGCTGTTAAGGTCCTGGACTTAGAGCAAAGCAAAGCTTCTCAAAGTTTCAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACCGGAACCTAGTGAAGGTCATCACTTCTTGCTGCAGTGTTGATTATAAAGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGGCCAATGGTAATTTGGACATGAGTTTATACCCCAATGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCAAAGATTAAACATTGCTATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAACCTGTCAATGTCCTGCTAGATGAAGATATGGTTGCACATGTTGCAGATTTTGGATTGGCCAGGTTTCTGTCTCAAAATCAATCAGAGCAACAAAGTAGTACTATGGGACTGAAAGGATCAATAGGCTATATTGCCCCAGAATATGGTCTAGGCGTTAAGGCTTCAACTCAAGGTGATGTATACAGTTTTGGGATCCTACTTCTAGAAATGTTCATAGCCAAAAAACCAACTGATGAAATGTTCAAAGAAGGATTAAGCCTGAACAAATTCATCTCAGCCATGGATGAGAATCAAGTACTGGAGGTTGCAGATCCAAGGCTCATTAAGGACTATGAAGAATATTGGAAACAAAGCATCAGCACTGATTATCATAGCAGTAGGTCTGGGGACAAGTGCTATAATAAGGATAACACACATTGGAGGCCCAAAGCTGAGGAGTGCATAGCTGCAGTGATAAGAGTAGGCTTGTCTTGTACAGCTTATCTTCCCAAAGATCGATGGACCATGACAGAGGCCTCAACAAAATTGCAAGGAATCAGGCAGTCTATGCTGGGCTTGTGA 3021 0.4095 MMTHIRLIFLLCFLLYHFHGITCNNKTDRDALVSFKSQVTDPNNALSTWLVHSNHCTWYGVTCSKVGNRVQSLTLPGLGLSGKLTSHLSNLTYLHSLDLSNNTFHGRIPPQFGHLSLLNLINLAYNNFSGKLPKKLGHLHRLQSLDFSVNNLTGKVPPTFGNLLSLKYLALAGNKFVGEIPSELGNLSNLSHFQLSVNYFTGEFPTSIFNISSLVFLSVTQNNLSGKLPQNLGLALPNLQTLALATNRFEGVIPSSISNASHLQYIDFANNEFHGSIPLFNNLKNLTHLALGNNSFSSTTSLNYKFFDSLRNSSQLQVLMIYDNHLTGELPSSVANLSTNLQHFCVADNWLTGRIPRGIEKIKNLISLSLENNDFTGELPSELGALNNLQSLMIHKNRLSGEIPDIFGNLTNLYSLAMGYNQFSGRIHRSIGQCKRLSFLNLGMNRLGGTIPQEIFQLSGLTTLYLQGNSLHGSLPPEINTMEQLETMDISDNQLSGFIPKEIDGCSSLKALVMARNKFSGSIPKSLGDLASLETLDLSSNNLTGPIPESFENYEYMVMLNLSFNHLEGAVPMKGVFLNLSRVDLRGNNKLCGLTNEIVQKLGVFLCVAGKKKRNILLPIILAVTGATALFISMFCLLWLLMSRKRKCNKQGETNLSCAPFKGLPQNISYGDIRLATNNFAAENLIGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASQSFNAECEALRNVRHRNLVKVITSCCSVDYKGDDFKALVMQFMANGNLDMSLYPNDEESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDEDMVAHVADFGLARFLSQNQSEQQSSTMGLKGSIGYIAPEYGLGVKASTQGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISAMDENQVLEVADPRLIKDYEEYWKQSISTDYHSSRSGDKCYNKDNTHWRPKAEECIAAVIRVGLSCTAYLPKDRWTMTEASTKLQGIRQSMLGL. 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02557 1006 SUPERFAMILY Protein kinase-like (PK-like) 660 995 IPR011009 -
Seca3g02557 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Seca3g02557 1006 Gene3D Phosphorylase Kinase; domain 1 662 766 - -
Seca3g02557 1006 PANTHER OS04G0122200 PROTEIN 24 184 - -
Seca3g02557 1006 SMART serkin_6 680 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02557 1006 Gene3D Transferase(Phosphotransferase) domain 1 767 1004 - -
Seca3g02557 1006 FunFam LRR receptor-like serine/threonine-protein kinase EFR 652 766 - -
Seca3g02557 1006 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515
Seca3g02557 1006 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Seca3g02557 1006 PRINTS Leucine-rich repeat signature 485 498 - -
Seca3g02557 1006 PRINTS Leucine-rich repeat signature 530 543 - -
Seca3g02557 1006 SMART LRR_typ_2 91 114 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 163 187 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 139 162 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 410 434 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 386 409 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 458 482 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 283 309 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 236 259 IPR003591 -
Seca3g02557 1006 SMART LRR_typ_2 530 553 IPR003591 -
Seca3g02557 1006 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Seca3g02557 1006 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Seca3g02557 1006 Pfam Protein tyrosine and serine/threonine kinase 683 903 IPR001245 GO:0004672|GO:0006468
Seca3g02557 1006 Gene3D Ribonuclease Inhibitor 280 601 IPR032675 -
Seca3g02557 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 767 1005 - -
Seca3g02557 1006 ProSitePatterns Protein kinases ATP-binding region signature. 686 714 IPR017441 GO:0005524
Seca3g02557 1006 FunFam LRR receptor-like serine/threonine-protein kinase EFR 303 612 - -
Seca3g02557 1006 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 302 - -
Seca3g02557 1006 SUPERFAMILY RNI-like 205 569 - -
Seca3g02557 1006 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Seca3g02557 1006 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Seca3g02557 1006 SUPERFAMILY L domain-like 26 331 - -
Seca3g02557 1006 ProSiteProfiles Protein kinase domain profile. 680 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02557 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02557 Seca-Chr3 45975846 45978977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02557 14 1001 Receptor kinase-like Gene Family AT3G47570 40.643 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca3g02557 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02557 - - gmx:100776054 1467.98