Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02551 ATGATGATCCACATTAGACTTACTTTGCTCCTATGTTTCCTACTGAGTCATTTTCATGGCATCCTATGCAACAATAACACAGATAGTGATAGAGATGCCCTTCTTTCATTCAGATCCCAACTCACTGACCCAAACAATGCTCTGTCCGGTTGGTTACTGCATTCCAATCACTGCAACTGGTATGGTGTCACCTGCTCCAAACTTGGAAACAGGGTCCAATCTCTCAACTTATCAGGACTTAGCCTCTCTGGTAAACTACCCTCTCACCTCTCCAATCTCACTTACCTTCATTCACTTGACCTTTCCAACAATACATTTCATGGCCAAATTCCCCCACAGTTTGGCCATCTCTCACTTCTTAATCTCATTAAATTAGCTTTCAACAATCTCAATGGTACACTTCCAGAACAGTTAGGCCATTTGCAACACCTACAAAGTCTAGACTTTTCTGTCAACAATCTCACAGGTAAAATCCCTCCAACATTTGGCAATCTCTTCTCTCTTAAGTATCTTGCATTGGCAAGGAACAAATTTGGGGGTGAGATTCCAAGTGAATTAGGTAATCTACGGAATCTTTCCCAACTTCAACTCTCAGAGAACAATTTCACTGGCGAGTTTCCCACTTCTATCTTCAACGTCTCTTCTTTAGTCTTCTTATCAGTGACACAAAACAATCTATCAGGCAAATTGCCACAAAATCTGGGCCTTGCCCTTCCAAATCTACAGACTATATCTCTGGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATTTCCAATGCCTCAAACCTTCAAAAAATTGATCTTGCTAACAATAATTTCCATGGCTCCATACCTCTATTCAACAACTTGAAAAATCTTACTCACCTTATTCTTGGTAATAATTATCTCTCTTCCACCACCTCATTGAATTATAAGTTCTTTGATTCCCTTAGAAACTCCACTCAGTTGCAAATTCTCATGATCAATGATAACCATTTGACTGGGGAACTTCCAAGTTCTGTTGCCAATCTGTCTACCAATCTCCAACAGTTTTGTGTTGCTGATAATTGGTTAAATGGAAGCATTCCCCCAGGGATAGAGAAAATTAAAAATCTCATATCTTTGTCTTTAGAAAACAATGGTTTCACTGGAGAGTTGCCATCAGAATTAGGAGCACTAAATAACCTGCAGCAGCTTGTGATACACAGTAATAGATTGTCTGGGGAGATTCCAGACATTTTTGGCAATTTTACAAATCTGTATATCCTTGCAATGGGAAATAACCAGTTCTCTGGTAGAATCCATAAAAGTATTGGACAATGCGAGAGATTGATTTTTCTTGACCTGAGAAAGAATAGGCTTGGTGGGACCATACCACAGGAGATTTTTCAGCTTTCTAGCTTAACAACCTTGTACTTAACAGGAAACTCTCTGCATGGTTCTCTTCCTCCTGGGATCAACAACGTGAAACAGCTTGAAACCATGTTTATTTCAGACAACCAGTTGTCAGGGTACATTCCTAAGGAAATACAAGGTTGTTCTAGCTTGAAGACACTTGTGATGGCAAGAAACAAATTCAGTGGCTCAATTCCAAAGAGTCTAGGGGATTTAGCATCCCTTGAGACTTTGGACCTATCATCAAACAATCTCACTGGCCCATTTCCTCAAAGTTTAGAAAAGCTTCAGTATATGGTGAGATTAAATTTGTCTTTCAATCATTTGGAAGGGGAGGTTCCAATGAAAGGTGTTTTTATGAACCTTAGCCGGGTTGATCTCAGAGGTAACACCAAACTCTGTGGCCTTACCAATGAAATTGTGCAAAAGTTGGGAGTCTCCTTCTGTGATGTTGGTAAGAAAAAGAGAAACATTTTACTTCCTATCATATTAGCAGTTACAGGTGCTACTGCTTTGTTCATTTCAATGCTCTATCTAATGTGGGTGTTGATGTCCCGAAAGAGGAAATGCAACAAGCAGGGGAAAACTAATTTGTCATGTGCTCCTTTTAAGGGGTTGCCTCAAAATATATCATATGGAGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGGTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACCCTTGCTGTTAAGGTCCTGGACTTAGAGCAAAGCAAAGCTTCTCAAAGTTTCAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACCGGAACCTAGTGAAGGTCATCACTTCTTGCTGCAGTGTTGATTATAAAGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGGCCAATGGTAATTTGGACATGAGTTTATACCCCAATGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCAAAGATTAACCATTGCTATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAACCAGTCAATGTGCTACTAGATGAAGATATGGTTGCACATGTTGCAGATTTTGGATTGGCCAGGTTTCTGTCTCAAAATCAATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTCCCCCAGAATATGGTCTAGGCGTTAAGGCTTCAACTCAAGGTGATGTCTACAGCTTTGGGATCCTACTCCTGGAGATGTTCATAGCCAAGAAACCAACTGATGAAATGTTTAAAGAAGGATTAAGCCTGAACAAATTCATCTCAGCTATGGATGAGAATCAAGTATTGAATATTGCAGATCAAAGGCTTATTAAGGATTATGAATATTCATCTCAAAGCTCCATCACTGATTATCATAATGGTGAGTCAAGCGACAACAGCTATGATAATAGTGAGGCACATTGGAGGCGCAAAGCTGAGGAGTGCATATCTGCTGTGATAAGAGTTGGCTTGTGTTGTACAGCTCATCAACCCAAAGATCGATGGACTATGAGAGAGGCCTTAACGAAATTGCAAGGAATCAGGCAGTCTATGTCGGGAATGCAGCTTCTTTAA 3033 0.4042 MMIHIRLTLLLCFLLSHFHGILCNNNTDSDRDALLSFRSQLTDPNNALSGWLLHSNHCNWYGVTCSKLGNRVQSLNLSGLSLSGKLPSHLSNLTYLHSLDLSNNTFHGQIPPQFGHLSLLNLIKLAFNNLNGTLPEQLGHLQHLQSLDFSVNNLTGKIPPTFGNLFSLKYLALARNKFGGEIPSELGNLRNLSQLQLSENNFTGEFPTSIFNVSSLVFLSVTQNNLSGKLPQNLGLALPNLQTISLATNRFEGVIPSSISNASNLQKIDLANNNFHGSIPLFNNLKNLTHLILGNNYLSSTTSLNYKFFDSLRNSTQLQILMINDNHLTGELPSSVANLSTNLQQFCVADNWLNGSIPPGIEKIKNLISLSLENNGFTGELPSELGALNNLQQLVIHSNRLSGEIPDIFGNFTNLYILAMGNNQFSGRIHKSIGQCERLIFLDLRKNRLGGTIPQEIFQLSSLTTLYLTGNSLHGSLPPGINNVKQLETMFISDNQLSGYIPKEIQGCSSLKTLVMARNKFSGSIPKSLGDLASLETLDLSSNNLTGPFPQSLEKLQYMVRLNLSFNHLEGEVPMKGVFMNLSRVDLRGNTKLCGLTNEIVQKLGVSFCDVGKKKRNILLPIILAVTGATALFISMLYLMWVLMSRKRKCNKQGKTNLSCAPFKGLPQNISYGDIRLATNNFAAENLIGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASQSFNAECEALRNVRHRNLVKVITSCCSVDYKGDDFKALVMQFMANGNLDMSLYPNDEESGSSLTLLQRLTIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDEDMVAHVADFGLARFLSQNQSEQQSSTMGLKGSIGYIPPEYGLGVKASTQGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISAMDENQVLNIADQRLIKDYEYSSQSSITDYHNGESSDNSYDNSEAHWRRKAEECISAVIRVGLCCTAHQPKDRWTMREALTKLQGIRQSMSGMQLL. 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02551 1010 Gene3D Ribonuclease Inhibitor 238 603 IPR032675 -
Seca3g02551 1010 ProSiteProfiles Protein kinase domain profile. 682 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02551 1010 SUPERFAMILY Protein kinase-like (PK-like) 661 997 IPR011009 -
Seca3g02551 1010 Gene3D Transferase(Phosphotransferase) domain 1 769 1008 - -
Seca3g02551 1010 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515
Seca3g02551 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 305 615 - -
Seca3g02551 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 653 768 - -
Seca3g02551 1010 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Seca3g02551 1010 Gene3D Phosphorylase Kinase; domain 1 664 768 - -
Seca3g02551 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Seca3g02551 1010 FunFam Leucine-rich repeat receptor protein kinase EMS1 206 304 - -
Seca3g02551 1010 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Seca3g02551 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 769 1009 - -
Seca3g02551 1010 PANTHER LEUCINE RICH REPEAT KINASE 2 309 1003 - -
Seca3g02551 1010 Pfam Protein tyrosine and serine/threonine kinase 685 905 IPR001245 GO:0004672|GO:0006468
Seca3g02551 1010 SUPERFAMILY L domain-like 28 300 - -
Seca3g02551 1010 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 186 - -
Seca3g02551 1010 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Seca3g02551 1010 SMART LRR_typ_2 93 116 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 141 164 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 388 411 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 189 213 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 285 311 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 460 484 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 532 555 IPR003591 -
Seca3g02551 1010 SMART LRR_typ_2 238 261 IPR003591 -
Seca3g02551 1010 ProSitePatterns Protein kinases ATP-binding region signature. 688 716 IPR017441 GO:0005524
Seca3g02551 1010 Gene3D Ribonuclease Inhibitor 177 237 IPR032675 -
Seca3g02551 1010 SUPERFAMILY L domain-like 341 596 - -
Seca3g02551 1010 SMART serkin_6 682 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02551 Seca-Chr3 45917617 45921005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02551 28 1002 Receptor kinase-like Gene Family AT3G47570 41.165 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca3g02551 PK_Tyr_Ser-Thr 7.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02551 - - gmx:100776054 1477.23