Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02550 ATGAGGGGTGATTTTGGCGTTTCAGACAAGGAACCTAATATAAAAAAAAGCACCAGTGTTGTTGGTTTGGGTGTGAAGAGTCTTGAAGCATTTCCTAATAAGATGACCATGATGGTGCATCATAATCATCACCACCGTTCATTCTCATCACCCTTTGATAATGATTCCTCTGCTGGTGATGCTGATGGTCCCACTACCTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGATGTTCCTGCTCTTGGTGCTGCCATTGATGGTGGCGGTGCTGCTTCTTCTGCTCTAATAAGACCTTTGCAGCCTTTTGACATTTCTTCTGCTTATACTCCTGCTACCACTACCTTCAAATCCCCAGCAGGTGGAATGGCGGCTTTGGGGTTTCCTTTCACAAGTGCACAATGGAATGAGCTTCAAAGACAAGCTATGATTTACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTGATCTTCTCATCCCAATTTCACTCACGCCTCCTACTTCTCGCTCTCCATTGGATGGTGGTTTCAATCTGAGGTTGTCAAGCAGCAACACTGATCCAGAGCCAGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGTTCTAGAGATGTGGCCCCTAACCACAAGTATTGTGAGCGCCATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCACACCAACAACAGCCTCCAAATCAAAAGGGCTCGCCATGATTCCAATCCTTTTCCTTCACCTGATGTTTCAGCAGCTATTTCTAACCACACAACCACAAAAGATGGATCTTCATCCCATTTTCTTGCCTCTACTACAACTCATCCATACCTTGAATCTTCCCTTTCTCTTGATAACAATTTTGGTGTCAAAGCTGCAAATTTTGACTCCATGGCTTCTGTTTCTTCTAATAAAGAACGCAGGGGCTTGGAGTGGATGCTGAATGGGGATCCTATTTCCCTAGGTGCTTCTAACTCAGAATGGCAATCTCTTATGCATAACAAAGTTGCAATGACCAGTGAAGGTTCCTGTAATAACACTGAGACACAATATCTGAATTCATTTGCACTCTATAGTTCTGGACTGGATCAACAGGACAGGCGCCTTCCTCTGTTCCTAAATCCTCTTGTTCCCATGGAAAATCTCCAATCAGAGAAACCAAGGGGTTTCATTGATGCTTGGTCTAATGCAGAAACAGGTGAAGGCAATGCTAACACCAACAGCAAGAACTCTGCTGCATCAATTGGTAAATTATCCCTTTCTTCTCTTGATCTATCAATGGGGGGTAGTGGGGGTGGTGCTGTGCATGAAAACATGGGAACTATTGGAATGGGGTTGGGACTAATGGAGCCTGATGGAAACACACACAATGATACTAAAATCTCTCTCTCAAATTGGCTCAACCCACCAGCATCTTGGGTGGCTTCAACACCTGGGGGTCCTCTAGCTGAAGTTCTAAGGCCAAGCACAGTCACTGCCACCAGTGATGCAACCTCCAATCCATCCTCCCCAGTCATAACTCATGTTGATCCAAGTAGCCCTCTAGGAACAATGGTATCATCTCCATCTGGGGTTCTACAGAAAACACTTGCTACATTGTCTGATAGTAGTAGCAATAGCAGCCCAAGGATTGCATCATCAAGGGCCAATTCTGAGATTGCCTTGCTCAAGTTTCAATCAAATGTAAATTAA 1707 0.4429 MRGDFGVSDKEPNIKKSTSVVGLGVKSLEAFPNKMTMMVHHNHHHRSFSSPFDNDSSAGDADGPTTYMSFTNHINLVSDVPALGAAIDGGGAASSALIRPLQPFDISSAYTPATTTFKSPAGGMAALGFPFTSAQWNELQRQAMIYKYMMASVPVPPDLLIPISLTPPTSRSPLDGGFNLRLSSSNTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHTNNSLQIKRARHDSNPFPSPDVSAAISNHTTTKDGSSSHFLASTTTHPYLESSLSLDNNFGVKAANFDSMASVSSNKERRGLEWMLNGDPISLGASNSEWQSLMHNKVAMTSEGSCNNTETQYLNSFALYSSGLDQQDRRLPLFLNPLVPMENLQSEKPRGFIDAWSNAETGEGNANTNSKNSAASIGKLSLSSLDLSMGGSGGGAVHENMGTIGMGLGLMEPDGNTHNDTKISLSNWLNPPASWVASTPGGPLAEVLRPSTVTATSDATSNPSSPVITHVDPSSPLGTMVSSPSGVLQKTLATLSDSSSNSSPRIASSRANSEIALLKFQSNVN. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02550 568 ProSiteProfiles QLQ domain profile. 130 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g02550 568 PANTHER GROWTH-REGULATING FACTOR 5 89 424 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca3g02550 568 ProSiteProfiles WRC domain profile. 188 232 IPR014977 -
Seca3g02550 568 SMART QLQ_2 129 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g02550 568 Pfam WRC 189 231 IPR014977 -
Seca3g02550 568 Pfam QLQ 130 163 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02550 Seca-Chr3 45898743 45902480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02550 122 534 GRF Transcription Factor Family AT4G37740 33.019 2.63e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca3g02550 WRC 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02550 - - gmx:100803096 712.22