Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02542 ATGGGTCATTGTTGCAGCAAAAACATTGCTGTCAACAACGAAACCGTCGCCGTCGATCACGGCCACAAAGCGCCTAATCATGCGGTATCGTCGCCTGCTCCTGCCGGAAACTCGGTCTCCGGCGCCAGTGATGCGACTCCCGGCAGGTACACTCCGGCGAACTCCTTCTCCACCAGCCCGTTTACCAGTCCTCTCCCGCCTGGTGTGGCGCCCTCGCCGGCCAAGACTCCTGGAAGGAAGTTCCGGTGGCCTTTGCCACCGCCGTCCCCGGCGAAGCCGATCATGGCGGCGTTGCTGAGGCGGCAGGGGAAAGCGAAACCGAAGGACGGGCCCATACCGGAGGAGCAAGGGGAGGGTGGGGAGGGAGAGAGGTCGTTGGATAAGAGCTTTGGGTATGGGAAGAATTTTGGGGCAAAGTTTGAGTTGGGGAAGGAAGTGGGTCGTGGACATTTTGGTCATACTTGTTGGGCCAAAGGAAAGAAGGGTGAACTCAAGGGACAATCAGTGGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCGGCAATAGCAATTGAAGATGTCCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAATAACGTCTACATAGTGATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGACAGAGGTGGAAGATACACAGAGGATGACGCTAAAGCTATTCTTGTACAAATTCTAAATGTAGTTGCCTTTTGTCATCTTCATGGAGTTGTTCACCGTGATTTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGTCTATCTGATTTTGTTAGGCCAGGTAATATGATTGAAACGACCTACCATATCTGCCCTATGATCATTGCCGTTCTCTTATTGACGTTTGCACTGCTAGCACTGACTTCTGATAAACTTGCAGAGCAGCGCCTCAATGATATTGTCGGCAGTGCCTACTACGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTCGAAGCAGACTTATGGAGTATTGGAGTTATATCATACATATTGTTATGCGGAAGTAGACCATTTTGGGCACGGACTGAATCAGGGATCTTCCGGTCTGTGTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATTTCACCAGAAGCTAAAGACTTTGTGAAGAGACTTTTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTCTAGCTCACCCGTGGCTGAGAAATGAAAAAAATGCTATTCCTTTAGATATTTTGATTTACAAGTTAGTCAAGTCATATGTGCGGGCCTCACCTTTGAAACGTGCGGCATTGAAGGCTCTCTCAAAAGCATTGACAGAAGATGAACTTATCTACCTTAGAGCACAGTTTAGCCTCTTGGAACCTAAGGATGGTTGCGTTTCACTTGAGAATTTTAGAGTTGCTCTTATGAAAAATGCAACTGATGCCATGAAGGAATCGAGGGTCCCTGACATTTTAAATTTGATGGAGCCACTCTCCTATAAAAAAATGGACTTCGAAGAGTTTTGTGCCGCTGCAATCAGTATATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTGCTACCACAGCCTTTGAATATTTTGAGGAGGCTGGAAACCGTGTCATTTCAGTTGAAGAGTTAGCACAGGAGATGAGTTTGGGCCCTTCAGCTTATGCTTTAATGGGTGACTGGATCAGAAAATCTGATGGAAAATTAAGCTTGGTGGGATATACTAAGTTTTTGCATGGTTTCACAGTTCGTAGTTCAAATACAAGACACCGACAGCTAGCATGA 1884 0.4586 MGHCCSKNIAVNNETVAVDHGHKAPNHAVSSPAPAGNSVSGASDATPGRYTPANSFSTSPFTSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKDGPIPEEQGEGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYTEDDAKAILVQILNVVAFCHLHGVVHRDLKPENFLFVSKEEDAVMKVIDFGLSDFVRPGNMIETTYHICPMIIAVLLLTFALLALTSDKLAEQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNAIPLDILIYKLVKSYVRASPLKRAALKALSKALTEDELIYLRAQFSLLEPKDGCVSLENFRVALMKNATDAMKESRVPDILNLMEPLSYKKMDFEEFCAAAISIYQLEVHPEWDRIATTAFEYFEEAGNRVISVEELAQEMSLGPSAYALMGDWIRKSDGKLSLVGYTKFLHGFTVRSSNTRHRQLA. 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02542 627 MobiDBLite consensus disorder prediction 22 125 - -
Seca3g02542 627 FunFam CDPK-related kinase 3 132 304 - -
Seca3g02542 627 ProSiteProfiles Protein kinase domain profile. 140 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02542 627 Gene3D Transferase(Phosphotransferase) domain 1 229 451 - -
Seca3g02542 627 MobiDBLite consensus disorder prediction 102 125 - -
Seca3g02542 627 CDD STKc_CAMK 139 434 - -
Seca3g02542 627 SMART serkin_6 140 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02542 627 FunFam Calcium-dependent protein kinase SK5 345 440 - -
Seca3g02542 627 Pfam Protein kinase domain 140 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02542 627 Gene3D Phosphorylase Kinase; domain 1 134 228 - -
Seca3g02542 627 MobiDBLite consensus disorder prediction 31 63 - -
Seca3g02542 627 FunFam CDPK-related kinase 1 471 542 - -
Seca3g02542 627 Gene3D - 452 582 - -
Seca3g02542 627 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 597 - -
Seca3g02542 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Seca3g02542 627 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Seca3g02542 627 SUPERFAMILY EF-hand 468 613 IPR011992 -
Seca3g02542 627 Gene3D - 474 542 - -
Seca3g02542 627 SUPERFAMILY Protein kinase-like (PK-like) 139 456 IPR011009 -
Seca3g02542 627 FunFam CDPK-related kinase 1 133 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02542 Seca-Chr3 45750560 45757795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02542 1 618 EF-hand Containing Proteins AT3G50530 58.787 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca3g02542 Pkinase 4.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02542 - - var:108331904 1053.89