Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02539 ATGGAGGTTTGCAGGGGATCCACCATTCAGTTGCTGAATTTCGCTGATGCCGTTGCGATCAGGAGCCGTTCGCCGGAGCGATTGTTTAGAATCCTCGACCTGTTTGAGACATTGCGTGGCCTAATTCCCGAGTTTGAGTCTCTGTTTTGTGATCAGTACAGTGTGTCGCTCGTGAATGAAGCAATCACGATTTGGAAGAGATTGGGAGAAGCAATTAGGGGTATTTTCATGGAGTTGGAGAATCTGATTCGCCGCGATCCGGCGAAGTCGGCGGTTCCTGGTGGCGGGGTTCACCCCATTACCCGTTACGTGATGAACTACCTCCGTGCCGCTTGTCGTTCACGACAAACTCTAGAGCAAGTGTTTGAAGACTATGGACATCCCTTGAAGGAATACCCCAAGCTTGATGATAGAATAGCACACTCTTCCTCTCTCTCAGTGCAGATGGATTGGATTATGGAGCTATTGGGGAGCAATTTGGAAGGAAAGTCCAAAATCTACAGGGAACCTGCTTTGTGCAAAGCAAAGATAGTGAATTAG 540 0.4852 MEVCRGSTIQLLNFADAVAIRSRSPERLFRILDLFETLRGLIPEFESLFCDQYSVSLVNEAITIWKRLGEAIRGIFMELENLIRRDPAKSAVPGGGVHPITRYVMNYLRAACRSRQTLEQVFEDYGHPLKEYPKLDDRIAHSSSLSVQMDWIMELLGSNLEGKSKIYREPALCKAKIVN. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02539 179 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 172 IPR004140 GO:0000145|GO:0006887
Seca3g02539 179 Gene3D Exocyst complex component Exo70 1 175 - -
Seca3g02539 179 Pfam Exo70 exocyst complex subunit 2 174 IPR046364 GO:0000145|GO:0005546|GO:0006887
Seca3g02539 179 SUPERFAMILY Cullin repeat-like 1 173 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02539 Seca-Chr3 45670357 45670896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02539 1 179 EXO70 exocyst subunit family AT5G58430 73.333 4.39e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02539 K07195 - gmx:100803694 300.827