Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02538 ATGATGGAGGAAGATGAGAATATTCAAGCATCAAAAGGGAAAAATGTTGAAAGCTTTACCTGCATAGAGCCACCTCAAAATCAAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAACAAATTAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAATTAGCAAGAGAACTTGGACTTCAGCCTCGCCAAGTTGCTATATGGTTCCAGAACAAAAGGGCAAGGTGGAAATCAAAAAAGATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCTCTAAAGGAAGAGAAAGAGTCTTTGCAATTAGAGGTATTGCAGAAGCTAAGTTATTTGATGGAAACTCAAACATCTCATGATGGTGGAAGAGAAGGAAAGGTTGCCAAGGAATATAGCACAGAAGATGGTGGTTCAGGAAGTGGAGCATACAGCAATTGCAGGGTTGAAGCAAAGCCAAGGTTTTCAAATGAGGGTTTGGAAGACAGAGTAGCTATGTATTCAGATGATCAAAATGAAAGTAGAAGAAGGAGTGAGAAATCTGAGGACAGAGAACACCAAGTTGTGAGAATGGATGATCATGCAGAGATTCCATTGGCATCACTTGAAAAATGGTACAGTGTGGACCCAAGTGGTATCTTAGATCAGTCATGCAGCAGTTCTCAATGGTTAGATTTCTGGACTTGA 747 0.3922 MMEEDENIQASKGKNVESFTCIEPPQNQKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARELGLQPRQVAIWFQNKRARWKSKKIEQEYRKLKDEYDNLASRFESLKEEKESLQLEVLQKLSYLMETQTSHDGGREGKVAKEYSTEDGGSGSGAYSNCRVEAKPRFSNEGLEDRVAMYSDDQNESRRRSEKSEDREHQVVRMDDHAEIPLASLEKWYSVDPSGILDQSCSSSQWLDFWT. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02538 248 MobiDBLite consensus disorder prediction 137 212 - -
Seca3g02538 248 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Seca3g02538 248 SMART HOX_1 35 96 IPR001356 GO:0003677
Seca3g02538 248 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Seca3g02538 248 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Seca3g02538 248 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g02538 248 CDD homeodomain 38 93 IPR001356 GO:0003677
Seca3g02538 248 Gene3D - 34 97 - -
Seca3g02538 248 FunFam Homeobox-leucine zipper protein ATHB-7 16 92 - -
Seca3g02538 248 SUPERFAMILY Homeodomain-like 24 93 IPR009057 -
Seca3g02538 248 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Seca3g02538 248 Pfam Homeobox associated leucine zipper 92 127 IPR003106 GO:0006355|GO:0043565
Seca3g02538 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 195 IPR045224 GO:0003700
Seca3g02538 248 MobiDBLite consensus disorder prediction 12 26 - -
Seca3g02538 248 MobiDBLite consensus disorder prediction 174 212 - -
Seca3g02538 248 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Seca3g02538 248 Coils Coil 84 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02538 Seca-Chr3 45641237 45642919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02538 29 248 Homeobox Transcription Factor Family AT2G46680 43.348 4.73e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g02538 Homeodomain 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02538 K09338 - gmx:100499926 353.599