Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02521 ATGGCAAAGGAATTATTAGTTCGTGCCTCGCATATGGAGCAGACAATTGCAGTAATTGAAAAGGTTGATTCCATGAATTCAGTGCAAGAAAAGAAAGATAGGTATTTTGAAAGGAGAAATTCTTTGGGAAGCAGACACTTGATGCCTCTGCAGTCTTTTTACTGTCCAATCTCTCTTGATATTATGGTGGATCCTGTGGAGACTTCCTCTGGCAAGACATATGAAAGAAGTGCAATAGAGAGGTGGTTTGCTGAAGGGAAGGATCACTGTCCCTTGACCATGTTGCCTCTGGATACTTCAGTCCTAAGGCCTAATAAGACTCTTAGACAGTCTATTCAAGAATGGAAAGAGAGGAACACAATCATTACCATTTCTACTATCAAATCCAAACTTGAAACAGATGAAGAAGAGGAAGTGCTTCAATCCTTAGACATATTGCAGGACCTATGCTTAGAAAGAGAGATCCACCGAGAATGGTTACAAATGGAGAATTACAATGCTGTTCTTATTGAACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGTGTCCTGCGCATCCTGTCTTTGCTTGCAAAGGATAATGCAGAGAACAAGGATGATATTGCTAAAGTGGATAATGCACTTAGATCAATTGTTCGCTCACTTGCACGTCAAATTGAGGAAAGCAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCTAAAAGTAACATGGTGTGCAATCTCATAGGAAACATTCAAGGAAGCATACTTCTCCTGGTAACAATGTTGAATAGTGATGATATTGAAGCAGCAAAAAATGCACATGAACTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGTGATGGCAAGGGCAAATTATTTTAAGCCTTTACTGCATAACCTTTCTACAGGACCAGAAAATGTGAAGACAGTCATGGCTGAAAATTTGTCGGAGATTGCATTGACAGACCAGAATAAATTGTCCTTAGTCAAAGACGGGGCACTGCAGCCTCTTCTTCAGCTGCTTCTAAATGATGAAGTGGAAATCAAGAAAGTGGCTGTCAAAGCTCTGCTACAGCTCTCAAGCTTACCAGAGAATGGCCTGCAGATGATTAGGGAAGGTGTTGCTCAACCACTATTGGAACTGCTATACCGTCACAGTTTACAGTCACCTACTCTGCATGAACAGGTTGTTGCCACAATAATGCATATTACCATATCAACCACTCACCAACAAGCTGTAGCAGAACAGGTTTCATTCTTAGATTCTGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACGGTACCTGAGATACAAAACATGATTCTCAAAGCTTTCCAGGCACTGTGCCAATCCTTCTCTGGCTTCTCCATCAGAAAGAGGTTGAAACAGATCTCAGCTGCTAAAGTATTGGTCCAATTGGTAGAGCTTAATACCCAAACTGTTCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACTGAAGACGGTGACTGCAGCAACTTCTCATCACATATAACCGAAAAATTCATTAAAATCCTGCTTACCATCATTGAGGCTTCTGATGACGCTGAAGAAATGGTTACTGCTATTGGTATCATATCCAAACTACCACAGGAGTCTCACATAACCCAGTGGCTTCTAGATTGTGGAGCACTTAAGTCTATTTTGACTTGTCTAACCGATCAACATAAGCACGCCTCACACAAAAAGCAAGTCATAGAGAACTCTGTTGAAGCTCTTTGTCGTTTTACTGTCTCAACAAATCTGGAGTGGCAGAAGAGAGTAGCTGAAGAAGGCATGATCCCACTGCTGGTGCAATTGCTGGTTTCTGGAACACCTTCTTCAAAACGAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCATACCATTTGAGCAAGCCAATAAAGAGGCCTAGTATTTTCAAACGCTGCATTGTAGCCCATGAAACTGGTTGCCCAGCACACCTAGGCACCTGCACAGTTGAGTCTTCATTCTGCATTTTAGAAGCTAATGCTTTGGAGCCCCTTGTGCGGATGCTTGCGGAGCAAGATGTTGGAATGTGTGAAGCTTCCTTAGATGTGCTATTGACTTTGCTTAATAGTGAAGCACCACAGAGTGGAAGTAAGATACTTGCAGATGCAAATGCTATTACACCAATGATAAAACTATTGAGTCGTCCGTCTACCAGGCTGCAGGAAAAAATTCTAGTGGGTTTACAACAAATTTTTCAACTGGATGAAGTAAAAAACAAGTACAAATCTTTGGCCACGATGCCCTTGGTAGACATAACTCAGAGTAAAGATAGCCGTTTGAAAAGTCTTGCTGCCAAGGGCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTACTTTTAG 2388 0.4121 MAKELLVRASHMEQTIAVIEKVDSMNSVQEKKDRYFERRNSLGSRHLMPLQSFYCPISLDIMVDPVETSSGKTYERSAIERWFAEGKDHCPLTMLPLDTSVLRPNKTLRQSIQEWKERNTIITISTIKSKLETDEEEEVLQSLDILQDLCLEREIHREWLQMENYNAVLIELLGSKNREIRKRVLRILSLLAKDNAENKDDIAKVDNALRSIVRSLARQIEESKLALELLLELSKSNMVCNLIGNIQGSILLLVTMLNSDDIEAAKNAHELLENLSFLDQNVIVMARANYFKPLLHNLSTGPENVKTVMAENLSEIALTDQNKLSLVKDGALQPLLQLLLNDEVEIKKVAVKALLQLSSLPENGLQMIREGVAQPLLELLYRHSLQSPTLHEQVVATIMHITISTTHQQAVAEQVSFLDSEEDIFKFFSLISLTVPEIQNMILKAFQALCQSFSGFSIRKRLKQISAAKVLVQLVELNTQTVRVNALKLFYCLTEDGDCSNFSSHITEKFIKILLTIIEASDDAEEMVTAIGIISKLPQESHITQWLLDCGALKSILTCLTDQHKHASHKKQVIENSVEALCRFTVSTNLEWQKRVAEEGMIPLLVQLLVSGTPSSKRNAAISIKQFSESSYHLSKPIKRPSIFKRCIVAHETGCPAHLGTCTVESSFCILEANALEPLVRMLAEQDVGMCEASLDVLLTLLNSEAPQSGSKILADANAITPMIKLLSRPSTRLQEKILVGLQQIFQLDEVKNKYKSLATMPLVDITQSKDSRLKSLAAKGLAQLGVLDKQSSYF. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02521 795 CDD RING-Ubox_PUB 53 102 IPR045210 -
Seca3g02521 795 Gene3D - 653 792 IPR011989 -
Seca3g02521 795 Gene3D - 222 643 IPR011989 -
Seca3g02521 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 330 372 IPR000225 GO:0005515
Seca3g02521 795 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 795 - -
Seca3g02521 795 SUPERFAMILY ARM repeat 321 704 IPR016024 -
Seca3g02521 795 SUPERFAMILY ARM repeat 667 786 IPR016024 -
Seca3g02521 795 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Seca3g02521 795 Pfam U-box domain 53 119 IPR003613 GO:0004842|GO:0016567
Seca3g02521 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 125 IPR013083 -
Seca3g02521 795 Gene3D - 126 221 IPR011989 -
Seca3g02521 795 ProSiteProfiles U-box domain profile. 48 122 IPR003613 GO:0004842|GO:0016567
Seca3g02521 795 SMART arm_5 589 629 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 540 586 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 663 703 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 278 318 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 360 403 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 319 359 IPR000225 GO:0005515
Seca3g02521 795 SMART arm_5 707 747 IPR000225 GO:0005515
Seca3g02521 795 SMART Ubox_2 52 115 IPR003613 GO:0004842|GO:0016567
Seca3g02521 795 SUPERFAMILY ARM repeat 123 413 IPR016024 -
Seca3g02521 795 SUPERFAMILY RING/U-box 46 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02521 Seca-Chr3 45269658 45274811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02521 51 795 U-box Gene Family AT1G76390 27.010 1.04e-57 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02521 - - lja:Lj1g3v1008930.1 1259.2