Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02516 ATGGACACAGTTCAGTGGGCACAGGGGAATATTGGAGGTGTGGTTAAACCTATGGAAGGAGGTTCAAATAAGCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACTAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGGAGGTATTGGACTGAAGGTGGTTCCTTGAGAAATGTTCCTGTTGGTGGTGGTTCTAGAAAGAACAAGAGATCCACTCCATCATCTTCAGCAGCATCAGCATCAACATCCTCCACAGTACCACCACTTCCATCATCAACAAAGAAGCTTCCTGATCTGACTACACCAAATTTCCCTCAATCTGCTTCTCAAAACCCAAAGATCCACCAAGGCCAAGATCTTAACCTAGCATATCCACCACCTGAGGACTATAACACCATGTCTAAATTTATTGAGGTTCCTTACAACACTGAAGATCACAAGACTTCATCATCTTCTGCTCATCATCATCAGTTGTCTGCTATGGAGCTTCTTAAAACTGGGATAACTTCCTCAAGGGGTTTAAATTCTTTCATGCCTATGTCTTTATCAGATTCTAGCTGCACAATGTATAATTCAACTGGGTTTCCTTTACAAGACTTTAATAAGCAGCCTGGTCTTAACTTCAGTCTTGAAGGGTTTGAAAATGGCTTTGGGGGTCTCCATGGAATTCAAGAAGGTGCTGCTGGTGCTGCTTCTGGTGCAAGGATCTTGTTTCCTGTAGAGGATTTGAAGCAGCAAGTTCCAAACACAGCTGATTTTGAGCAGAATAGAAGTCAAGGAGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 900 0.4289 MDTVQWAQGNIGGVVKPMEGGSNKPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSSSAASASTSSTVPPLPSSTKKLPDLTTPNFPQSASQNPKIHQGQDLNLAYPPPEDYNTMSKFIEVPYNTEDHKTSSSSAHHHQLSAMELLKTGITSSRGLNSFMPMSLSDSSCTMYNSTGFPLQDFNKQPGLNFSLEGFENGFGGLHGIQEGAAGAASGARILFPVEDLKQQVPNTADFEQNRSQGDSTGYWNGMLGGGSW. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02516 299 MobiDBLite consensus disorder prediction 1 37 - -
Seca3g02516 299 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Seca3g02516 299 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca3g02516 299 MobiDBLite consensus disorder prediction 89 141 - -
Seca3g02516 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 194 IPR045174 GO:0003700|GO:0006355
Seca3g02516 299 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca3g02516 299 MobiDBLite consensus disorder prediction 276 299 - -
Seca3g02516 299 MobiDBLite consensus disorder prediction 78 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02516 Seca-Chr3 45165382 45167274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02516 27 299 C2C2-Dof Transcription Factor Family AT3G61850 44.912 1.39e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g02516 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02516 - - lja:Lj0g3v0363619.1 437.187