LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g02493	ATGTCTAAGAAATCTCTCGCTGCGACTCTTTTTGTTTTGTTTATGGCCTTCTGTGATGTCTCTCTGGCGAGGATGGTGAAGAAAACAGAGGACCGAAAGTATGGTTATATAGTTCATGTGTCCAAATCCCAAATGCCAGCAAGCTTTAACCATCACTCGGTATGGTATGAATCGATTTTGAAATCGATCTCTAACTCAACAGAAATTCTCTACACCTACAACAATGCAATTCATGGATTCTTTACAAGGCTAACAGCTGAAGAAGCTAGATTGCTAAAGATCCAGATTGGAGTTCTAAAGGTGTTTCCAGATAAACAATACAAGCTCCACACAACAAGAACCCCACACTTCCTTGGCCTCGACAAAATCCAGGGCACATTCCTCGAGACAAATGGCAAAGAAGGTAGGGATGTAGTTGTTGGACTCCTCGATACTGGTGTTTGGCCTGAAAGCAAGAGCTTCGACGATACTGGATTTGGACCCATCCCTAGCACCTGGAAAAGAAAATGTGAAACGGGTACCAATTTCTCAACCTCGAACTGTAATAAGAAATTGATTGGAGCCAGGTTTTATATAAAGGGCCAGGAGTCCTTTATGGGTCGACTTGATGAATCCATGGGTTTATTATCACCTCTTAGGGGTTCTATATCACCTCGAGATGATGATGCTAATATGCACCTCGAAGGAGAGGAACTAGTGGCAGATACCCATATTTTGCCTGCAACTTTAGTGGGCTCAAAAGAAGGTAATGCCATCAAGCAATACTTGTTTTCTAATCCAAAATCGACGGGTACAATTGTATTTCAGGGAACAGAGCTTGGAATTGAGCCATCACCGGTTGTTGCATCATTCAGCTCTCGAGGCCCTAATTCTATCACCCCAAAGATATTAAAGCCCGATTTGATCGCACCAGGTGTTAACATCTTAGCAGCATATTCAAGAAATGTGAGCCCCACTGATTTGGATTCAGATGATAGACGTGTGGACTTCAACATCATCTCGGGCACGTCCATGTCATGCCCTCATGTGAGTGGGCTAGCAGCTCTAATCAAGTCGGCTCATCCAGATTGGAGCCCAGCTATGATTCGATTTGCACTGATGACCACGAGCTATACAACTTACAAGAATGGTAAACCATTGTTGGACAGTGCCAACAAAAAACCAGCAACGCCGTTTGATTTTGGTGCTGGACACGTGGACCCTGTTCCTGCACTTAATCCAGGATTGGTTTATGATTTGACAGTGGATAATTATCTAAGCTTCCTCTGTGCGTTAAACTACACAGCTGATAATATCGAAGCTATGACGAGGAGAAAGTATAAGTGTGATCCAAACAAACAATATAGTGTAACCGACCTTAATTACCCTTCATTTGCTGTGGTGTTTAAAAAGCCAGCAGGTAGGAACGGTCCAACAAAAGTTAAACACATGCGAACTCTTACCAATGTGGGGTCTGCAGGAACGTACAAGGTATCGGTTAAGTTGGATATCCCAAATGTTAAGGTCTCGGTTGAGCCGAGAGTGTTGAGTTTCAAGGGGGGAAATGAGAAAAAATCATATACAATTACATTTTCAGCTACATTTCCAACATCAAGAATGAAACCGCAAGATGCTTATGGTTTTGGACGTTTAGAATGGTCAGATGGAAACCATGTTGTGGGAAGTTCAATTGCAGTTAGCTTGGAATGA	1689	0.4269	MSKKSLAATLFVLFMAFCDVSLARMVKKTEDRKYGYIVHVSKSQMPASFNHHSVWYESILKSISNSTEILYTYNNAIHGFFTRLTAEEARLLKIQIGVLKVFPDKQYKLHTTRTPHFLGLDKIQGTFLETNGKEGRDVVVGLLDTGVWPESKSFDDTGFGPIPSTWKRKCETGTNFSTSNCNKKLIGARFYIKGQESFMGRLDESMGLLSPLRGSISPRDDDANMHLEGEELVADTHILPATLVGSKEGNAIKQYLFSNPKSTGTIVFQGTELGIEPSPVVASFSSRGPNSITPKILKPDLIAPGVNILAAYSRNVSPTDLDSDDRRVDFNIISGTSMSCPHVSGLAALIKSAHPDWSPAMIRFALMTTSYTTYKNGKPLLDSANKKPATPFDFGAGHVDPVPALNPGLVYDLTVDNYLSFLCALNYTADNIEAMTRRKYKCDPNKQYSVTDLNYPSFAVVFKKPAGRNGPTKVKHMRTLTNVGSAGTYKVSVKLDIPNVKVSVEPRVLSFKGGNEKKSYTITFSATFPTSRMKPQDAYGFGRLEWSDGNHVVGSSIAVSLE.	563

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g02493	562	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	19	110	IPR037045	-
	Seca3g02493	562	PRINTS	Subtilisin serine protease family (S8) signature	334	350	IPR015500	-
	Seca3g02493	562	PRINTS	Subtilisin serine protease family (S8) signature	135	154	IPR015500	-
	Seca3g02493	562	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	405	-	-
	Seca3g02493	562	SUPERFAMILY	Subtilisin-like	45	456	IPR036852	GO:0004252\|GO:0006508
	Seca3g02493	562	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	234	559	IPR045051	-
	Seca3g02493	562	Pfam	Peptidase inhibitor I9	36	110	IPR010259	-
	Seca3g02493	562	Gene3D	-	422	561	-	-
	Seca3g02493	562	FunFam	Subtilisin-like protease SBT1.9	24	110	-	-
	Seca3g02493	562	Pfam	Subtilase family	277	397	IPR000209	GO:0006508\|GO:0008236
	Seca3g02493	562	ProSitePatterns	Serine proteases, subtilase family, serine active site.	335	345	IPR023828	-
	Seca3g02493	562	Pfam	Fibronectin type-III domain	452	559	IPR041469	-
	Seca3g02493	562	Gene3D	Peptidase S8/S53 domain	275	418	IPR036852	GO:0004252\|GO:0006508
	Seca3g02493	562	Gene3D	Peptidase S8/S53 domain	137	200	IPR036852	GO:0004252\|GO:0006508
	Seca3g02493	562	Gene3D	-	229	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g02493	Seca-Chr3	44550346	44552132	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g02493	223	560	Subtilisin-like Serine Gene Family	AT5G67360	62.722	2.53e-143	430

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g02493	-		-	csv:101209691	466.077