Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02483 ATGGATTCCTTCACTGAGCTTGATTTCTCCAATCTTGAAATTCCTCATTGGCTTTGCGATGCTCCACAATCTCACACTCAGGACAAAATCATGGATATTCCGCCATGGGAGGGTTTCTTCGAGATTAATTGGACAAAACAGTTACCATACCAAAGCAAGCATCTTTGCTTCAACGAGTTCACCGACCTTGAAAATTTCGACTTCGACTTCAATCCCCCACCCCTTTATGATGATTTTGAGGTCGACCAAAAGCCCCTCAACATTGTTATGCCGAACCAGGGACATAGCAATATTGAGAGTGGTTTTGTAACTTGTGTGAAGAAAGAGGAAAATCAAGAGGTGTCACTAGCATTACAAGTGACCAATAGCAATAGGAAGAAGAGGTCTGATTCATTGGAATTTGATGAGATAAAGAAGCATTTTGGTGTTCCAATAACAAAAGCAGCAAAGGAAATGAATGTGGGATTAACCCTATTGAAGAGAAGGTGCAGGGAGCTCAACATTAGGAGATGGCCTCACAGAAAGCTTAAGAGCTTGAAGTTACTCATTGACAACGTTAAGGAATTGGGTTTGGCAAACGAGGTTGCTATGTTGGAGAAACACAAGATGATGTTGGAGAAACTACCGGGAATGGAACTGAATGAAGAAACCAAGAAGCTGAGACAGGCTTGTTTTAAAGCTAATTATAAACGAAGAAGATATTTGGCCTTACAAGCTTGA 720 0.4097 MDSFTELDFSNLEIPHWLCDAPQSHTQDKIMDIPPWEGFFEINWTKQLPYQSKHLCFNEFTDLENFDFDFNPPPLYDDFEVDQKPLNIVMPNQGHSNIESGFVTCVKKEENQEVSLALQVTNSNRKKRSDSLEFDEIKKHFGVPITKAAKEMNVGLTLLKRRCRELNIRRWPHRKLKSLKLLIDNVKELGLANEVAMLEKHKMMLEKLPGMELNEETKKLRQACFKANYKRRRYLALQA. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02483 239 ProSiteProfiles RWP-RK domain profile. 119 200 IPR003035 -
Seca3g02483 239 PANTHER PROTEIN RKD4 104 234 IPR044607 GO:0003700
Seca3g02483 239 Pfam RWP-RK domain 132 179 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02483 Seca-Chr3 44433221 44434555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02483 130 236 AtRKD Transcription Factor Family AT5G53040 63.551 1.57e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca3g02483 RWP-RK 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02483 - - aprc:113850801 342.813