LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g02480	ATGAGATTATGTCTCTTGAATTTGATTCAGAGGAAGATGCTTTTTAATTTTTATAGTAATTATGCTAAAATAGTTGGGTTTTTAGTAAGAAAAGATGACGTCTATCGTGATGATTGGTATGGGATTGTTATGAGAAACATCGTATGTAATAGGCAAGGAGAGAGGTTTGAGAAGAACATGCAAAGGAAGGACAGGTGTCGTGAACCAAGGGCCATTACCCACACACGTTGCCAAGCAAGGCTTCGTGTTCGTTTAGGTTACATGAGTGGAAAATGGACAGTTGCTCATTTTGAGCCCAACCATAATCACGAGTTGACCCCATCAACATATGTTCATTTGATTCCTGCATATAGAGATATTTCTGAGGGTGATAAGGCTCAAGTGAATAGTTTGCATATGTATGGTGTTCGTACTTGTCATATTTTGGGTTTCATATTAGGTCAGAAAGAGGGGTATGCATATCTAGGCTTTTGCAAAAAGTATTTGTACAACCATATAGATAAGGACAAAAGGGCTAAAATAAAGGATGGTGATGCTTTTGTTGCCTTATGTTACCTTCAGGCAAAAGTTGATAATGACACAATGATGTTCACAAAATTTACTATTACAGATGATGGAAATCTTAAGAATCTGTTTTAG	639	0.3662	MRLCLLNLIQRKMLFNFYSNYAKIVGFLVRKDDVYRDDWYGIVMRNIVCNRQGERFEKNMQRKDRCREPRAITHTRCQARLRVRLGYMSGKWTVAHFEPNHNHELTPSTYVHLIPAYRDISEGDKAQVNSLHMYGVRTCHILGFILGQKEGYAYLGFCKKYLYNHIDKDKRAKIKDGDAFVALCYLQAKVDNDTMMFTKFTITDDGNLKNLF.	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g02480	212	PANTHER	OS01G0519700 PROTEIN	14	212	-	-
	Seca3g02480	212	Pfam	FAR1 DNA-binding domain	16	106	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g02480	Seca-Chr3	44350221	44350859	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca3g02480		FAR1	5.9e-21	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g02480	-		-	ccaj:109792835	225.328