Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02476 ATGGGGAAGAAAGGAGGAAGCTGGTTCTCTTCAGTGAAAAAAGTTTTCAAGTCATCTTCTAAGGACTCGCCGGTGCCAGAGAAGAAGTTTCAGAATGAAGAGAAATGGCAGCATGAAGCACCAGAGGTTGTATCTTTTGAGCATTTTCCTGCAGATAGTTCTCCAGATATAACCAATGAGGGAAGTACTACATCAACACCAGTGACTGAAGATAGAAATCATGCCATTGCTTTTGCAGCAGCAACTGCAGCAGCTGCTGAAGCTGCTGTTGTAGCTGCTCAAGCAGCAGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCACTCTAAAGAAGAAAAGGCAGCAACACTCATTCAATCATACTACAGAGGCTACCTTGCACGACGTGCATTGCGTGCTTTGAAAGGATTAGTGAGGCTGCAAGCACTTGTGAGGGGATATAATGTGCGGAAGCAAGCGCAGATGACAATGCGTTGCATGCAAGCATTAGTTCGAGTACAATCAAGAGTAAGAGCTCGTAGAATCCAATTGACTCAAGAGAAGCTTCATAGAACAGTGGAGGGGCACGAGCTTGAGGAACAAGATGCTACACTTCTGAGCCCCCTCACAAAGTTAGACACCTATGGTTGGGACAATAGGCGTCAAGGTTGCCAGAAAATTAAGGAAAGTGATTTGAGGAAACATGAAGCTGCAATGAAAAGGGAGAGAGCTCTTGCGTACGCTTTCAACTGCCAGGTTATTCATCAGAAGCAATATTTGCATATAGACCCAAGTGGTGATGATATTGAAAACTGTACCACTGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAGCGTTGGATGTCATCACAATCACAGCATGTTAGGCATTTGGGGCCACGTGAGATGACTCTTGCTACTAGCGCCACAGATGACATGTCTGAAGAAAAGACGGTTGAAATGGACATGGTTGCAGCTCAAGACTCAGCCCACCACAACATGGGCCTCATGAACCAAGACTTTCTTGATTCAAGCCCAATCTCTAATCGGCATCACCAGCGACAGCATAGTGTGCCTAGCTATATGGCCCCTACCCAGTCTGCAAAGGCCAAGGTTCGGAGTCAAGACCCATCTAAGCAACGGGCTTCACCTGGGCCTCAGTGGAACTCATCCACAAGGAGTTCTGCTATTGGGCTTGGCTGTGACTCATCTAGCTCTGGTGGGACCACTTCGGTCCATCCGTTTCTAAGGAGCCCAAGCCCAAAAATTAATGGGATTCGCCTCCAGTCTAGACGGATTTCTGGTGGCAGCCCAGAGAATGTTGGCGTTGAGGATTGGGCCATTCGGGTTGGAGCCCACGGCTGGGCATGA 1356 0.4801 MGKKGGSWFSSVKKVFKSSSKDSPVPEKKFQNEEKWQHEAPEVVSFEHFPADSSPDITNEGSTTSTPVTEDRNHAIAFAAATAAAAEAAVVAAQAAARVVRLAGYGRHSKEEKAATLIQSYYRGYLARRALRALKGLVRLQALVRGYNVRKQAQMTMRCMQALVRVQSRVRARRIQLTQEKLHRTVEGHELEEQDATLLSPLTKLDTYGWDNRRQGCQKIKESDLRKHEAAMKRERALAYAFNCQVIHQKQYLHIDPSGDDIENCTTERERAQLDWNWLERWMSSQSQHVRHLGPREMTLATSATDDMSEEKTVEMDMVAAQDSAHHNMGLMNQDFLDSSPISNRHHQRQHSVPSYMAPTQSAKAKVRSQDPSKQRASPGPQWNSSTRSSAIGLGCDSSSSGGTTSVHPFLRSPSPKINGIRLQSRRISGGSPENVGVEDWAIRVGAHGWA. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02476 451 MobiDBLite consensus disorder prediction 332 418 - -
Seca3g02476 451 MobiDBLite consensus disorder prediction 20 37 - -
Seca3g02476 451 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Seca3g02476 451 Gene3D - 108 161 - -
Seca3g02476 451 MobiDBLite consensus disorder prediction 49 68 - -
Seca3g02476 451 SMART iq_5 110 132 IPR000048 GO:0005515
Seca3g02476 451 SMART iq_5 133 154 IPR000048 GO:0005515
Seca3g02476 451 MobiDBLite consensus disorder prediction 15 37 - -
Seca3g02476 451 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Seca3g02476 451 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Seca3g02476 451 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Seca3g02476 451 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Seca3g02476 451 Pfam Protein of unknown function (DUF4005) 334 379 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02476 Seca-Chr3 44307922 44313131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02476 1 441 IQD Protein Family AT3G49260 47.619 1.90e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02476 - - aprc:113873497 620.542