Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02470 ATGGACTTGGACAGCATTGAATGTGTGTCATCCTCCGATGGCATGGATGAGGATGAGATCCATCCCCATCATCATTCTGAGTTTTCTTCCACAAAGCCTCGTAATGGAGGCACTAATAACAATAATTCTATGGGTCCCACCGCCATTGCTCCTGCCACCAGCGTCCACGAGTTGCTAGAATGCCCTGTATGTACCAATTCAATGTACCCACCAATTCATCAGTGCCATAATGGCCACACACTCTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTCGGAGATATTAGGTGTTTGGCACTGGAGAAGGTGGCTGAATCGCTTGAGTTACCTTGCAAGTATTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGTAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTTGCTCATTTGAGGGATGATCATAAGGTCGACATGCACACAGGATGCACATTTAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGAATGGCCCCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGTAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACCCCACGAAGTATTCGTGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAACGAAATATGGCCCTATTTTTCTCTGGTGGTGATAGGAAAGAACTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGTATCCCAAATCTATGTAGCTGA 972 0.4465 MDLDSIECVSSSDGMDEDEIHPHHHSEFSSTKPRNGGTNNNNSMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS. 324
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02470 323 MobiDBLite consensus disorder prediction 31 46 - -
Seca3g02470 323 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca3g02470 323 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Seca3g02470 323 SUPERFAMILY TRAF domain-like 114 306 - -
Seca3g02470 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Seca3g02470 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Seca3g02470 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Seca3g02470 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Seca3g02470 323 MobiDBLite consensus disorder prediction 14 30 - -
Seca3g02470 323 MobiDBLite consensus disorder prediction 1 46 - -
Seca3g02470 323 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Seca3g02470 323 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Seca3g02470 323 CDD Sina 175 303 - -
Seca3g02470 323 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Seca3g02470 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Seca3g02470 323 CDD RING-HC_SIAHs 59 97 - -
Seca3g02470 323 SUPERFAMILY RING/U-box 48 103 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g02470 Seca-Chr3 44245357 44249421 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02470 29 309 C3H Transcription Factor Family AT2G41980 76.868 1.18e-163 456
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02470 K04506 - gmx:100810573 661.373