Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g02470 | ATGGACTTGGACAGCATTGAATGTGTGTCATCCTCCGATGGCATGGATGAGGATGAGATCCATCCCCATCATCATTCTGAGTTTTCTTCCACAAAGCCTCGTAATGGAGGCACTAATAACAATAATTCTATGGGTCCCACCGCCATTGCTCCTGCCACCAGCGTCCACGAGTTGCTAGAATGCCCTGTATGTACCAATTCAATGTACCCACCAATTCATCAGTGCCATAATGGCCACACACTCTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTCGGAGATATTAGGTGTTTGGCACTGGAGAAGGTGGCTGAATCGCTTGAGTTACCTTGCAAGTATTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGTAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTTGCTCATTTGAGGGATGATCATAAGGTCGACATGCACACAGGATGCACATTTAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGAATGGCCCCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGTAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACCCCACGAAGTATTCGTGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAACGAAATATGGCCCTATTTTTCTCTGGTGGTGATAGGAAAGAACTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGTATCCCAAATCTATGTAGCTGA | 972 | 0.4465 | MDLDSIECVSSSDGMDEDEIHPHHHSEFSSTKPRNGGTNNNNSMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS. | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g02470 | 323 | MobiDBLite | consensus disorder prediction | 31 | 46 | - | - | |
| Seca3g02470 | 323 | Pfam | Seven in absentia protein family | 103 | 302 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Seca3g02470 | 323 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 97 | IPR001841 | - | |
| Seca3g02470 | 323 | SUPERFAMILY | TRAF domain-like | 114 | 306 | - | - | |
| Seca3g02470 | 323 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 113 | IPR013083 | - | |
| Seca3g02470 | 323 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 302 | IPR008974 | GO:0005515 | |
| Seca3g02470 | 323 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 167 | IPR013083 | - | |
| Seca3g02470 | 323 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 40 | 308 | - | - | |
| Seca3g02470 | 323 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
| Seca3g02470 | 323 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Seca3g02470 | 323 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 113 | 169 | - | - | |
| Seca3g02470 | 323 | ProSiteProfiles | Zinc finger SIAH-type profile. | 114 | 174 | IPR013010 | GO:0008270 | |
| Seca3g02470 | 323 | CDD | Sina | 175 | 303 | - | - | |
| Seca3g02470 | 323 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 112 | - | - | |
| Seca3g02470 | 323 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 170 | 302 | - | - | |
| Seca3g02470 | 323 | CDD | RING-HC_SIAHs | 59 | 97 | - | - | |
| Seca3g02470 | 323 | SUPERFAMILY | RING/U-box | 48 | 103 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g02470 | Seca-Chr3 | 44245357 | 44249421 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g02470 | 29 | 309 | C3H Transcription Factor Family | AT2G41980 | 76.868 | 1.18e-163 | 456 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g02470 | K04506 | - | gmx:100810573 | 661.373 |