Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02468 ATGTCTAGCAGAAGATCTCGTTCGAGACAATCTGGTGGTTCCGCTGAGATAAGTGATGCTCAAATCACTGATCTCGTCTCCAAGTTACAACAACGTATCCCTGAGCTTCGTGCAAGGCGCTCCAACAAGGTTTCAGCTGCGAAAGTGTTGCAGGAGACTTGCAACTACATTAAGAACTTGCACAGAGAGGTGGATGATTTAAGTGACCGATTATCAGAGCTTTTGGCTACCACTGACTCCAACAGTGCTCAAGCAGCCATTATTAGGATACTACTTAGTGCAACTAGCATTTATATAATTAATATCTATGCATCTCGATCTCACTTTCTTAATTATTATATATTCTCTTATGTGGCCCCGTAG 363 0.4215 MSSRRSRSRQSGGSAEISDAQITDLVSKLQQRIPELRARRSNKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLATTDSNSAQAAIIRILLSATSIYIINIYASRSHFLNYYIFSYVAP. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02468 120 Gene3D - 20 89 IPR036638 GO:0046983
Seca3g02468 120 CDD bHLH_AtPRE_like 17 77 - -
Seca3g02468 120 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Seca3g02468 120 FunFam Transcription factor ILI6 7 89 - -
Seca3g02468 120 Coils Coil 57 77 - -
Seca3g02468 120 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Seca3g02468 120 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Seca3g02468 120 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02468 Seca-Chr3 44178139 44178823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02468 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 65.591 1.90e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g02468 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02468 - - gmx:100804830 153.295