Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02454 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGGTGGGTGAGAATGACGAGTGCTCTTATGCTCGTAAGAAGAGGAAGACAAACGGGTACTACCCTCTGAACCTTCTCGGCGATGTCGCCAACGGTATAATCCCGGTGAGTTTTCACGGTCTTCTGAGTGCTGGTGTGACAGAGAAAGGATTCTCTGCATCGTGGTGCACCCAAGTTTCGTGCTCCCCTGGCGAAGTGGAATCGAACTCAAAGGGTGAGGCTGTTCCAGCGAAGAAGAACCAGGTTCAGCGGCCGCCACTGGTTCGGACTTCGAGGGGGCGAGTGCAGGTTCTCCCTTCTCGCTTCAATGACTCAGTTATTGATAATTGGAGGAAGGAGAGTAAGACCAACTTGCGTGATTGTGATAATATCGAAGATGAATTTGAATGCAAGAGGGATAAGTTAAGCTTCAAGACACCCAAAACTTGCAACCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTCTAAGCCTCGCAAGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTATAAGAGTTTTGGTACGAGCAAGCATTCAACTTTGCGTGGTGCATTGGCCTCGAGGCGTGAGATGTTTGTTGAGGATGAGAGAGGAAGGTTTTTGGAAGAGGATGGGGTTGATTTGATGGGGAATGATAGATTATTGAAGGAGAATGGGGAGAAAAAAGATGGGCTGTATGGACCAGAAGATTTTTATGCAGGTGATATTGTGTGGGCCAAAGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTACGAGACAGGCACCTGAGCTGGTTCTGAGGTCTTTTATAGCTGATGCAGCCTGTGTCATGTTTCTTGGGTACGCAGGGAGTGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCACGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAAGGGCAGTCTGAATTGAGTTTCTATAATCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACAGAGAGGTTGACAGCTGATATAAATGCAGCAGCTGGTAATGCTGGTTTTGATGATACTGTTCTGAAATCCTTTCAGGAGGTAACTGGTCCAAACCAGTATGCTGGACATCGCTTTTTGAACCAGGATTTATTTGACAAGAAAGACACACGACCCTGTGAAGCCTGTGGATTGGGCCTTCCTTACAAGATGTCAAAGAAAACAAAGGATTCAACACCTAGTGGTCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACCTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGAATATATTTTCCAAGCCTTCACTCAGTTGTGTGCAAGTGTGGTTTTTGTGGGTCAGAAAAGCAAGCTCTAAGCGAATGGGAACGACACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCACTGGAACAATGGATGCTGCAGTTGGCGGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAGCCTTCTCTTAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTACAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAGATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCACGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTATCACAGGGCTCCAAATCCAGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGATCAAGGTTAATCTCATCCAACAGAATAAAGCAAGAAGACACTCCTGTTGATAATGTTGAGCATGACCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAATCACACTAAAAAGAGAGCAGCAGATGAAGCCACTTTTCTTCAAGTGAGGGGTCACTACCATCATTCTTTAGATGCAATACAGCGTTTAAATACATACAGAGTGGTAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTGTTTGCACGAAGAAATATTCAAGAAGGCGAAATGGTATGA 2886 0.4383 MIIKRNLKSQMPSLKRCKLGDPVGENDECSYARKKRKTNGYYPLNLLGDVANGIIPVSFHGLLSAGVTEKGFSASWCTQVSCSPGEVESNSKGEAVPAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTNLRDCDNIEDEFECKRDKLSFKTPKTCNQNARKGRNDEKIGSKPRKYSALCGDDVGVRYKSFGTSKHSTLRGALASRREMFVEDERGRFLEEDGVDLMGNDRLLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPTRQAPELVLRSFIADAACVMFLGYAGSENQRDYAWVKHGTIFPFMDYVDRFQGQSELSFYNPSDFQMAIEEAFLADQGFTERLTADINAAAGNAGFDDTVLKSFQEVTGPNQYAGHRFLNQDLFDKKDTRPCEACGLGLPYKMSKKTKDSTPSGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHSVVCKCGFCGSEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKQEDTPVDNVEHDPFSAARCRIFQRTNHTKKRAADEATFLQVRGHYHHSLDAIQRLNTYRVVEEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMV. 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02454 961 CDD PWWP_AtATX3-like 258 362 - -
Seca3g02454 961 ProSiteProfiles PWWP domain profile. 259 328 IPR000313 -
Seca3g02454 961 FunFam Histone-lysine N-methyltransferase 695 814 - -
Seca3g02454 961 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 961 IPR025780 -
Seca3g02454 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 814 IPR013083 -
Seca3g02454 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 694 IPR013083 -
Seca3g02454 961 SMART PHD_3 645 692 IPR001965 -
Seca3g02454 961 SMART PHD_3 756 812 IPR001965 -
Seca3g02454 961 SMART PHD_3 451 503 IPR001965 -
Seca3g02454 961 FunFam Histone-lysine N-methyltransferase 633 694 - -
Seca3g02454 961 Pfam PWWP domain 260 353 IPR000313 -
Seca3g02454 961 Pfam PHD-finger 451 504 IPR019787 -
Seca3g02454 961 Pfam PHD-finger 658 692 - -
Seca3g02454 961 MobiDBLite consensus disorder prediction 85 105 - -
Seca3g02454 961 Gene3D SET domain 837 961 IPR046341 -
Seca3g02454 961 CDD PHD_ATX3_4_5_like 645 691 IPR042011 -
Seca3g02454 961 SUPERFAMILY SET domain 925 961 IPR046341 -
Seca3g02454 961 ProSiteProfiles Zinc finger PHD-type profile. 643 694 IPR019787 -
Seca3g02454 961 ProSitePatterns Zinc finger PHD-type signature. 646 691 IPR019786 -
Seca3g02454 961 ProSiteProfiles Extended PHD (ePHD) domain profile. 697 812 IPR034732 -
Seca3g02454 961 SUPERFAMILY FYVE/PHD zinc finger 644 708 IPR011011 -
Seca3g02454 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 507 IPR013083 -
Seca3g02454 961 SUPERFAMILY FYVE/PHD zinc finger 449 506 IPR011011 -
Seca3g02454 961 ProSiteProfiles Zinc finger PHD-type profile. 449 505 IPR019787 -
Seca3g02454 961 Pfam PHD-zinc-finger like domain 699 811 - -
Seca3g02454 961 PANTHER PHD FINGER PROTEINS 13 524 - -
Seca3g02454 961 SUPERFAMILY Tudor/PWWP/MBT 252 356 - -
Seca3g02454 961 CDD ePHD_ATX3_4_5_like 700 811 IPR041955 -
Seca3g02454 961 CDD PHD_TCF19_like 452 502 - -
Seca3g02454 961 Gene3D - 254 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02454 Seca-Chr3 43773256 43782031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02454 646 811 C2H2 Transcription Factor Family AT3G14740 32.948 1.61e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g02454 zf-HC5HC2H_2 1.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02454 - - aprc:113853254 1806.96