Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02453 ATGTTATTTGTCATGGTATTTGTGAGCACAGTTTTGAATGCAAGCACACTGCTGATGAAGCAGTTCCTAAATCAAGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGCATCGCAGATCTGAGAGAGGCACGCTATAGATCAGAAGGGAAAGACTGCTATCTATTTAAAATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTAATTAATCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTGGGTGATGATGAGAGCCGGATTGTACTCATTGCTAAGACTAATGTATCTTCTGGCGATGAGCTAACGTATGACTATTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 429 0.4103 MLFVMVFVSTVLNASTLLMKQFLNQVLEYRGEQVRRSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSSGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02453 142 ProSiteProfiles SET domain profile. 1 117 IPR001214 GO:0005515
Seca3g02453 142 FunFam Histone-lysine N-methyltransferase 12 142 - -
Seca3g02453 142 Gene3D SET domain 23 142 IPR046341 -
Seca3g02453 142 SUPERFAMILY SET domain 26 139 IPR046341 -
Seca3g02453 142 SMART set_7 2 123 IPR001214 GO:0005515
Seca3g02453 142 Pfam SET domain 50 116 IPR001214 GO:0005515
Seca3g02453 142 SMART PostSET_3 126 142 IPR003616 -
Seca3g02453 142 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 26 142 IPR044570 GO:0042800|GO:0051568
Seca3g02453 142 ProSiteProfiles Post-SET domain profile. 126 142 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02453 Seca-Chr3 43771608 43772937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02453 26 142 C2H2 Transcription Factor Family AT2G23740 34.328 6.83e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g02453 SET 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02453 - - zju:107414796 240.736