Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02448 ATGAACATTCCCAACCCAATTCTCACCCTCTCCTTCCTCTTCCTCTTCCTCTTCAACCCTCCTCTAAAACACCTCCTAGTGGTAGCAACCATAGAATTAGAAACATGCTTGGACAGTGTTTGCCAGGCAAAGGAGCCAATAATCCGATTCCCCTTCCATATAGAGGGAAAGCAGGAAAAAACATGTGGATACCCAGGGTTCAAGTTATCCTGCAGTGAGAAAGGCCAAACACTGCTCAACCTACCTTACACCGGAGGAGAATTCAGTATCCAAGCAATAAACTATGCCGCTCAACAACTATGGCTGAATGACCCTAACAATTGCCTCCCAAAACGCATTCTCTCACTCAACCTCTCTGCCTCTCCATTCGACGCCGTTTACTATCAACAATTCACCTTCTTTAACTGCTCCTCCAACTTAGAGTACCTCAAGTATCGATACAAACCCATAGCTTGTCTCAGCGATTCTTCTAATAAGTACATCGTTTTCGCAACGCCTTCCCCCTCTGTGTTCGCGCACTTGTCCTCTGTTTGCGATTTGGTCCACACGGTGAAGGTGCCTGTTCAGTCGCCGTTTTACGATCATGTGATGTCGTCTGACCTCACCGACGATCTCCGCCTCTCGTGGGATTCGCCGTCGTGTGGGAGGTGTGCGTCTCACGGTGGCCGCTGTGGATTTAAAAACAACACGACGTTTGAACTTGCCTGTTTCGATGTCCCTTCACCAGGGATTTCCATTGGTGCAACTTACGTCTTAGCCATATGCATAGGAGTACCGGCACTGTTGTGCTTCATTGCACTATTGAGTTACATCTGCAGCAGGTTCAGGTTCAGGTTCAGAATAGGGGCCCACGGCTGGACTTGGACTTGGACATGGGCTCATGAGACAGTGGCAGATTTTGAGCCTCTTATTGACTCACGGTCCAATATTATTTCGGGCCTAGACAGGCCCACTATTGAGTCCTACCCAAAAATAGTTATAGGTGAAAACATACGCTTACCCAAACCCGATGACAATATCTGCCCAATATGTCTGTCAGAGTACATGCCCAAAGAGACGGTGAAAACCATACCTGAGTGTGAACATTGCTTTCATGCACAATGCATCGACGAATGGCTTCCACTGAATGCGTCGTGCCCAATTTGCCGAACTTCTCCCCCAAAATTACCACAACCGCTTGCTCCATCATGA 1191 0.4794 MNIPNPILTLSFLFLFLFNPPLKHLLVVATIELETCLDSVCQAKEPIIRFPFHIEGKQEKTCGYPGFKLSCSEKGQTLLNLPYTGGEFSIQAINYAAQQLWLNDPNNCLPKRILSLNLSASPFDAVYYQQFTFFNCSSNLEYLKYRYKPIACLSDSSNKYIVFATPSPSVFAHLSSVCDLVHTVKVPVQSPFYDHVMSSDLTDDLRLSWDSPSCGRCASHGGRCGFKNNTTFELACFDVPSPGISIGATYVLAICIGVPALLCFIALLSYICSRFRFRFRIGAHGWTWTWTWAHETVADFEPLIDSRSNIISGLDRPTIESYPKIVIGENIRLPKPDDNICPICLSEYMPKETVKTIPECEHCFHAQCIDEWLPLNASCPICRTSPPKLPQPLAPS. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02448 396 ProSiteProfiles Zinc finger RING-type profile. 341 383 IPR001841 -
Seca3g02448 396 SUPERFAMILY RING/U-box 332 387 - -
Seca3g02448 396 SMART ring_2 341 382 IPR001841 -
Seca3g02448 396 Pfam Ring finger domain 340 383 IPR001841 -
Seca3g02448 396 CDD RING-H2_EL5-like 340 383 - -
Seca3g02448 396 Pfam Wall-associated receptor kinase galacturonan-binding 36 104 IPR025287 GO:0030247
Seca3g02448 396 Pfam Wall-associated receptor kinase C-terminal 173 237 IPR032872 -
Seca3g02448 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 386 IPR046948 -
Seca3g02448 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 388 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02448 Seca-Chr3 43707392 43709999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02448 34 393 C3H Transcription Factor Family AT2G46495 36.264 3.04e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02448 - - gmx:100818969 533.487