Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02436 ATGCCTGCTCTGCGCCAAGATATGGAGACTTGTTTGGTAATAATAATATCCTGTTTCATTAGATTAATCTTGTTTTTGATGGATGTAGAGCCTGCACTTGCACTTAACTGTCCTGAATTATGGTGCGGAAATCAGGTGGTTCGATTCCCGTTCCGAATCAAAGGGCGCCATCCACCACTCTGTGGCTATCCGGGTCCGGGCTTTGATTTATTTTGTTCCTCAATGAATGAGACTGTGATTCAACTCCCTAAGTCAGTGAAGCTCAATGTCAACTATATTGACTACATACACCAAACTATTGAATTATATGATCCACATGGCTGCCTTCCCAGACACCTCCCCAACCTCACTCCTTCAGCTTCCCACTTCCAGTTCCAGCAGCCCTACTACTATTATGATAGCTATTACTTTTTCAACTGTTCACCGATGAACAGAGATACTATAGACTACTATTTGGTTCCATGCCTAACCACCTCTACCTCTCAAGCATACGCCATTCCCTCTAGTAGAACCATCGAGTACCTGCCCCTGTCTTTTTGCACCAAAATGTTTAATATTTCATCCTTCCCTTCTGATTTTAATTCCGAGGACAACGTTCTTCGTTTGACATGGTCTGAGCCAAACTGTAAACATTGCGAATCAAAAGGGAACAGGTGTGGGTGGAAGAATAATACTGTCAACAAAGAAATATATTGTTTCGCCAATCACAAAGGTTCATCAACAGCTCTAGTGACCACAGCAGGATCAGTCTTAGGATCGTTGTTTTTTGTCCTGTTGACTGGTGCAGTCTACCACATCTATGACTCTTACATACTCAATAAAGAAAAACAAGCAATTATTGAAAAATTTCTACAAGACTACAGAGCTCTCAAGCCCACCAGATACTCTTATGTCGAAATTAAGAGAATCACCAATAATTTTAAGGAAAAGTTAGGACAGGGAGCCTATGGAGCTGTGTTTAAAGGAAGCATTTCAAAAGAATTTACTGTTGCTGTCAAGATCCTCAATGTTTCCCTAGGAAATGGGGAAGACTTTATTAATGAAGTTGGGACAATGGGTAGAATTCACCATCTTAACATTGTTTGCTTGGTCGGTTTCTGTGCTGATGGCTTTAAAAGAGCTCTCATCTATGAGTTCTTACCAAATGGTTCATTGCAGAAGTTCATAAATTCACCAGATAACAGGGAAAACTTCCTTGGTTGGAAAAGGTTGCATGAAATTGCTTTAGGTATAGCCAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAGCGCATTCTCCATTTTGATATCAAACCTCAAAATGTGTTACTAGACCAAAACTTTACTCCAAAAATATGTGACTTTGGTCTAGCAAAATTGTGTTCAAGGGATCAGAGCATAGTGTCCATGACTACAGCTAGAGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCAAGAAACTTTGGCAATGTATCATACAAATCAGATGTGTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACAGAGGACTTGGAGGAAAACACTAGCCATGTTTACTATCCAGAATGGGTTCATAATCTTTTAGAAGAACATGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAGTCTGGCAATTGTGGGACTTTGGTGCATCCAATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACATAGACAGATCCCCAATACCTCCTAATCCTTTTGCTTCAGCAGGACAAAGGAGAAAAGGTGCAACTGCAACTGTGGGTGCGCCGGCTAGGCAGCTGACCCAAAATTTAGAAGTAATCCAAGAGTTAGATTGA 1869 0.4082 MPALRQDMETCLVIIISCFIRLILFLMDVEPALALNCPELWCGNQVVRFPFRIKGRHPPLCGYPGPGFDLFCSSMNETVIQLPKSVKLNVNYIDYIHQTIELYDPHGCLPRHLPNLTPSASHFQFQQPYYYYDSYYFFNCSPMNRDTIDYYLVPCLTTSTSQAYAIPSSRTIEYLPLSFCTKMFNISSFPSDFNSEDNVLRLTWSEPNCKHCESKGNRCGWKNNTVNKEIYCFANHKGSSTALVTTAGSVLGSLFFVLLTGAVYHIYDSYILNKEKQAIIEKFLQDYRALKPTRYSYVEIKRITNNFKEKLGQGAYGAVFKGSISKEFTVAVKILNVSLGNGEDFINEVGTMGRIHHLNIVCLVGFCADGFKRALIYEFLPNGSLQKFINSPDNRENFLGWKRLHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDQNFTPKICDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDLEENTSHVYYPEWVHNLLEEHEEMRIHVDDEGDAKIARSLAIVGLWCIQWHAMDRPSMQMVVQMLEGDIDRSPIPPNPFASAGQRRKGATATVGAPARQLTQNLEVIQELD. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02436 622 FunFam PR5-like receptor kinase 380 587 - -
Seca3g02436 622 MobiDBLite consensus disorder prediction 586 606 - -
Seca3g02436 622 PANTHER RUST RESISTANCE KINASE LR10-RELATED 276 593 IPR045874 GO:0004672
Seca3g02436 622 Pfam Protein kinase domain 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02436 622 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02436 622 Pfam Wall-associated receptor kinase galacturonan-binding 37 104 IPR025287 GO:0030247
Seca3g02436 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Seca3g02436 622 ProSiteProfiles Protein kinase domain profile. 305 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02436 622 Gene3D Phosphorylase Kinase; domain 1 279 379 - -
Seca3g02436 622 Gene3D Transferase(Phosphotransferase) domain 1 380 583 - -
Seca3g02436 622 FunFam serine/threonine-protein kinase PBS1-like 273 379 - -
Seca3g02436 622 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Seca3g02436 622 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02436 Seca-Chr3 43615615 43617951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02436 12 589 Receptor kinase-like Gene Family AT1G66910 36.801 6.26e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca3g02436 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02436 - - lang:109328752 853.973