Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02435 ATGGCTGAATTATGGAAAACCCTTGTTGTGGTAGTTATCCTAATCTTATACTATGAAACTTGTAGGGGTGCTCCACTGTGTTCTAATAAGTGCGGGGTCCATAACATAAGCCATCCTTTCCGGCTGCAAGAAGATCCAGTAGGTTGTGGTGACCTGAGGTACAACCTATCCTGTGAAGAGCAGAATCAATTGATGCTGTATTTGGGATCTGGTAGTAAATACCATGTGCAGTCAATTAATTACAACAACTACACAATACGACTTTTGGATGTCAATCTTTCACACTCTTCCCTCCCTCTCCCTCCTTCTTCTTTAGGCCTCTACAATAGCAGTTTCAGTCTCAGCTATACTGAGCCATATAGAGTTTACAATCTGGATTATGGGCACAGTTATGATAGAATATTGATGAAGTCTGTGTTATATGTGAGCTGTCCGAATGGGGTGGAATCCTTATCCTCCGGTGTATATGTTGATGGCAGTAGTTCAGCAGCTTGCATGAATAGTTCATATGCGCATGGTAATTCTTTCTTATATGTCGATGTTGAGGATGTACCTCTTTGGAAATTGGGGCTGGGAGACTCTTGTCGTATAGAGTCTATGTATCTGACATCGTGGCCGCATGGCAATGCCAACATTTCATGCACAGACATCCGTCATATGCTCTTTTATGGCTTTGAACTTTCTTGGGTCAATAGTCTCTGCAAATATCCTGATTGGTATGTCGAGTTGGATGACAATAACCATCCTAATTGTGTGCTGGAATCAGGAAACCTGAACTGGTTAGTCCTTTATATCTTGATTCTAACAGAACTGGTTGCTTTGTTCTGTGGAGCCAAATTTGTTCTTGGAGGGCCATGTATCATTGTCTTAATAATCTATAAATGGAGACGAAGGCATTTATCCATGTACGACAGCATTGAAGATTTTCTACGAAGTGACAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAGGATGACACAAGGATTCAAGACAAAACTAGGAAATGGAGGTTATGGCTCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTTTGGTAGCAATCAAGTTATTAGATAAAGCCAAAGCCAATGGTCAAGAATTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGGTGCAGCTTATTGGTTTTTGTGTGGAGGGATCAAAGCGTGCTCTTATATATGAATTCATGCCAAATGGATCTCTTGAAAAACACATTTTTTCTCAAGAAGAGAGTTGTTCCTTAAGCTGCGAAAAATTGTACACCATTGCTCTTGGAGTGGCTCGTGGCATTGAATACTTGCACAATGGTTGCAATATGAAAATCCTTCACTTTGACATAAAGCCTCATAACATTCTTCTTGATGAGAATTTCAACCCAAAAGTGTCTGATTTTGGACTTGCAAGACTTAGTCCTACAAATAATAGCATTGTGTCTCTGACTGCAGCAAGAGGAACAATAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACAATTTCCTACAAAGCAGATGTTTATAGCTTTGGGATGTTATTAATGGAGATGGCTAGTAGAAGGAAGAACTTGAATGCATTGGCTGAGCAATCCAGCCAGATTTATTTCCCTTTCTGGGTTTATGATCAGTTAAACAATGGACAGGAAATCTCAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCATTATGGTGTATACAAACAAGGCCTAGTGATCGTCCTTCCATGGATAAAGTGTTAGAGATGCTTGAAGCAAGTGATGAATTACAAATGCCTAATAAGCCTTACCTATTTCCACAAGATCTACCTTCGGAGGATGTAATACATCATAGCAGCTCAAGACCATCCTCTGAAAAATCAATAAGTGATTCCAATGAATCAACAACCTGA 1944 0.3976 MAELWKTLVVVVILILYYETCRGAPLCSNKCGVHNISHPFRLQEDPVGCGDLRYNLSCEEQNQLMLYLGSGSKYHVQSINYNNYTIRLLDVNLSHSSLPLPPSSLGLYNSSFSLSYTEPYRVYNLDYGHSYDRILMKSVLYVSCPNGVESLSSGVYVDGSSSAACMNSSYAHGNSFLYVDVEDVPLWKLGLGDSCRIESMYLTSWPHGNANISCTDIRHMLFYGFELSWVNSLCKYPDWYVELDDNNHPNCVLESGNLNWLVLYILILTELVALFCGAKFVLGGPCIIVLIIYKWRRRHLSMYDSIEDFLRSDNNIMPIRYSYKDIKRMTQGFKTKLGNGGYGSVFKGQLRSGRLVAIKLLDKAKANGQEFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKHIFSQEESCSLSCEKLYTIALGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLSPTNNSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWVYDQLNNGQEISIENDTDEEMKLAKKMMIVALWCIQTRPSDRPSMDKVLEMLEASDELQMPNKPYLFPQDLPSEDVIHHSSSRPSSEKSISDSNESTT. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02435 647 Gene3D Phosphorylase Kinase; domain 1 310 405 - -
Seca3g02435 647 ProSiteProfiles Protein kinase domain profile. 331 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02435 647 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Seca3g02435 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 629 IPR045874 GO:0004672
Seca3g02435 647 Gene3D Transferase(Phosphotransferase) domain 1 406 613 - -
Seca3g02435 647 FunFam serine/threonine-protein kinase PBS1-like 302 405 - -
Seca3g02435 647 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Seca3g02435 647 SUPERFAMILY Protein kinase-like (PK-like) 312 602 IPR011009 -
Seca3g02435 647 MobiDBLite consensus disorder prediction 632 647 - -
Seca3g02435 647 MobiDBLite consensus disorder prediction 609 647 - -
Seca3g02435 647 SMART serkin_6 333 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02435 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Seca3g02435 647 FunFam PR5-like receptor kinase 406 611 - -
Seca3g02435 647 Pfam Protein kinase domain 334 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02435 Seca-Chr3 43612340 43615347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02435 279 615 Receptor kinase-like Gene Family AT4G18250 49.292 8.49e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca3g02435 Pkinase 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02435 - - psat:127093935 786.178