Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02428 ATGATGTTTGATGCTATTTGGGGAGCATATTTATCTGTTTTTAGATGTCAGTGTTCACTCATGATCATCCATTCTATTGTCTTGGTAATATGTCTAATTGGTTTTTTAAAATTCCATACAGGTCATGGTGGTTCTCGTGCTGCTGAATATTTGAAGGAGCATCTATTTAATAATCTCATGAAGCATCCAAAGTTTTTTACAGATACCAAATTGGCTATAAGTGAAACATATCAGCAAACTGATGCTGACTTTCTGAATTCTGAAAAAGATACTTTTCGTGATGATGGTTCAACTGCTTCAACAGCAGTTTTGGTTGATAAGCATCTTTATGTTGCAAATGTTGGAGATTCTAGAACTGTAATATCAAAAGCTGGAAAAGCAATTGCGCTATCTGAGGATCATAAGCCTAACAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGCAATCGTATGTTGAAGCCATTTGTGGTAGCAGAACCTGAGATCCAGGACCAGGAGATAAATGAAGAAACTGATCTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACCAAATGACGACGCTGTTTCTCTTGCCCGCGCAGAGGAGGAGGCTGAGGCAGCTGCTCGTAAGTTAACAGAAGCTGCTTTTGCTCGTGGTAGTGCAGATAACATTACTTGCATTGTGGTGCGCTTCCATCATGAAAAAGCATCATTCCCAGCTAATCCTGACAAGGCAGGTCCAGCTAGCAGTCAGCATGAATAG 819 0.42 MMFDAIWGAYLSVFRCQCSLMIIHSIVLVICLIGFLKFHTGHGGSRAAEYLKEHLFNNLMKHPKFFTDTKLAISETYQQTDADFLNSEKDTFRDDGSTASTAVLVDKHLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEINEETDLLVLASDGLWDVVPNDDAVSLARAEEEAEAAARKLTEAAFARGSADNITCIVVRFHHEKASFPANPDKAGPASSQHE. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02428 272 SMART PP2C_4 2 248 IPR001932 -
Seca3g02428 272 SUPERFAMILY PP2C-like 41 251 IPR036457 -
Seca3g02428 272 CDD PP2Cc 41 250 IPR001932 -
Seca3g02428 272 ProSiteProfiles PPM-type phosphatase domain profile. 26 250 IPR001932 -
Seca3g02428 272 Coils Coil 216 236 - -
Seca3g02428 272 PANTHER PROTEIN PHOSPHATASE 29 250 IPR015655 GO:0004722|GO:0006470
Seca3g02428 272 Gene3D - 39 270 IPR036457 -
Seca3g02428 272 Pfam Protein phosphatase 2C 34 243 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02428 Seca-Chr3 43389010 43396547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02428 30 258 PP2C-type Phosphatase Gene Family AT5G53140 79.913 4.94e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02428 K17506 - gmx:100805795 400.593