Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02427 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATATTGGTGCAAAGAAATTTGCTCTCAAGGCTCTAAATCTGTACCCTGATTTGGAGGATCTTTCCCAGTTTTTGACAACAATTGATATTTACATCTCTGCTGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAGGAGACAGTTAGAAAGCAGTACAGGAAGCTGGCTCTCTCCCTTCACCCTGACAAAAACAAGTCTTTGGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAAGCATGGAGTTTGCTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTCGAAAGGTTTCCAACACAATACACCCCACCATGCCGGATCTCAACCAGATGTGCCCGGTTCAAATGGTTTTTATAATTTTAAGAAGAATGTAACTTCGAATGTGAGAACTGGAAATAATAATGCTCGGGCACCTTCAACTTCAGTTCCTCCTCCTCATAAAAAGGCTGAAACCTTTTGGACTATCTGTAATCGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAATCATACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGGTCCGCCTCCCAATGTTTTTAAGTCATCAAATTGGCCGTCCCATCAACGGCATCAAAATTCTCAACATCATGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACTCCAAAATGGCTGGGTTTGGTAGCACGGATGGGTCACCATCTGTTTCTGCACAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTGAGGAGAGAGGGAACACTATCAATTGCTGAATGGGAGAGGAGTCAAATGTCTAAGAGGACTGAAGGTTCTTTTCATAAAGTTGAAAAACCTATGAAAAAGAGGAAGACAGAGGATATTCGCATGAATGGTTACCAAGGATATATGGCAAATCATATGGCTATGCGACATGGAGCAGCAGGTTTTGGCAGTGTTTCTGAATCAGGAAAGCCTAACTTGGAAACAGAAAGGAAGTATGGTTTTTCAGGTCTTACTGGCCAGCATTACAGCACCAGAGAGTTGTCAATGTTTGAAGTACGAAACATGTTGATGGATAAGTCACGGTTGGAAATTCGTAAGAAACTTGAAGAATGGAGATTAATGGCTGAAGCTAAGATTATCAACAAGGACAAGGAGAATAAGAGACAGAAGAGCACATATAATGGCAAGACAACTGGTTCAGAGAAGTATGGAGATTCCACTGTTAATGGTAACAGGAATCTGGACATTGATTCCTTCCCTGTCGCATCTGATGACACTGTTAAGAATAGCCAAGCCTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGCGGAGGACCAAGTCTGGGCTGCTTATGATGATGACGACGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCATAAACCCATTTAGAATGCGGATCAGTTGGCTTAACTCTCGAAGCAATAGTGAATTGGGCCCAATTGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGACTTCAGGACTGGCAAGCATGAAATAACTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTTCACATCTTTCCTGGAAAAGGGGAAGTCTGGGCTCTATATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAGGTGATACACAAGTATGATATGGTGGAGGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACCCCACTTGTTAAGGTTGCTGGCTTTAGAACAGTGTTTCAAAGGCACATGGACCAAGATCAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACTGGCCAAGAAGCTCATAATGCTCCAAAGGGTTGTCGTGAATTGGATCCAGCAGCTACTCCTTTAGATCTCCTTCAGATCTTAACAGAAGCTAATGAGGCACCAGATAATGTTTAG 2148 0.4181 MMECNKDEAVRAKEIAERKFSEREYIGAKKFALKALNLYPDLEDLSQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALSLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSSKGFQHNTPHHAGSQPDVPGSNGFYNFKKNVTSNVRTGNNNARAPSTSVPPPHKKAETFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKSSNWPSHQRHQNSQHHAGSNNTNFQWGSHSKMAGFGSTDGSPSVSAQAASVVQQASEKVRREGTLSIAEWERSQMSKRTEGSFHKVEKPMKKRKTEDIRMNGYQGYMANHMAMRHGAAGFGSVSESGKPNLETERKYGFSGLTGQHYSTRELSMFEVRNMLMDKSRLEIRKKLEEWRLMAEAKIINKDKENKRQKSTYNGKTTGSEKYGDSTVNGNRNLDIDSFPVASDDTVKNSQAYVTINVPDPDFHNFDLDRAENSFAEDQVWAAYDDDDGMPRYYARIHKVISINPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVHIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKVAGFRTVFQRHMDQDQVRRIPKEEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLLQILTEANEAPDNV. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02427 715 MobiDBLite consensus disorder prediction 236 278 - -
Seca3g02427 715 MobiDBLite consensus disorder prediction 426 449 - -
Seca3g02427 715 MobiDBLite consensus disorder prediction 132 157 - -
Seca3g02427 715 Gene3D DnaJ domain 64 176 IPR036869 -
Seca3g02427 715 MobiDBLite consensus disorder prediction 432 449 - -
Seca3g02427 715 MobiDBLite consensus disorder prediction 130 157 - -
Seca3g02427 715 Pfam DnaJ domain 67 128 IPR001623 -
Seca3g02427 715 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Seca3g02427 715 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca3g02427 715 PANTHER BNAC03G44070D PROTEIN 2 698 - -
Seca3g02427 715 Pfam Domain of unknown function (DUF3444) 475 681 IPR024593 -
Seca3g02427 715 CDD DnaJ 67 120 IPR001623 -
Seca3g02427 715 SMART dnaj_3 66 123 IPR001623 -
Seca3g02427 715 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca3g02427 715 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca3g02427 715 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca3g02427 715 SUPERFAMILY Chaperone J-domain 63 158 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02427 Seca-Chr3 43350332 43355476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02427 5 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.342 2.20e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02427 - - cam:101501612 1257.66