Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02426 ATGAACTATATGTTTCTTCTCCTCGTCACTTTCAAGATTATAAAGAAGAAGGTCGCAAAGGTACAAGAGATTATGGGTTTTCAAACATCACATAGCACTAAGCGGATAACACAGCCTGTTTTGAAAGCAAAGGAGGACTCAAGCGATGCTCATGAACGCTCTTTAATTCCAAGGGCACTTAACTTCCTAACCAATACCAAGCCCATTCCCTCCTCAGGCTATGATTCATGGGTGGTAAGGCACCCTTCTGCACTGAACTCGTTTGATAGATTGATGAAAGCAGCCACTGGGAAGAGGATCGTCGTTTTTTTAGACTACGATGGTACATTATCACCCATTGTAAATGACCCTGATCGCGCTTTCATGTCTGAGGAGATGCGTGCAGCAGTACGTGAAGTTGCTACTTATTTTCCAACGGCAATAATTAGTGGAAGAAGTAGAGATAAGGTAAAAGACTTCGTAAAGTTGGATAATTTATATTATGCTGGGAGCCATGGGATGGACATAATGGCACCATCAATGCCAGTTAGATCTTCTGACGGCAAGCATTTTGACATTGCCCTTCAAACAAATGGCAACGAAGTTCTCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGATATTAAGAGGTCTAGAGAATGGAGTAAAGGAGATACAAGGTGCAAAGGTAGAGGACAACGGATTCTGCATCTCTGTACATTTCCGGCAGGTTCATGAAAAGGATTATAACGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAAAATCCGCAATTTTGCTTAACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAGAATGGAACAAAGGTAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTCCAACAACATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGCCATACAGAGTAGAGGGCAAGGTTATCCAATTATAGTGACTTCAGTTCCAAGAGAAACAAATGCTTTGTACTCTTTGCGTGACCCATCAGAAGTATTAGTCTTCTTGTCACAGCTGGCAAAATGGAGGAAAACCTCTTACTCAAGCAGGCCTTTAAATTTTGGTTAA 1116 0.4068 MNYMFLLLVTFKIIKKKVAKVQEIMGFQTSHSTKRITQPVLKAKEDSSDAHERSLIPRALNFLTNTKPIPSSGYDSWVVRHPSALNSFDRLMKAATGKRIVVFLDYDGTLSPIVNDPDRAFMSEEMRAAVREVATYFPTAIISGRSRDKVKDFVKLDNLYYAGSHGMDIMAPSMPVRSSDGKHFDIALQTNGNEVLFQPAKKFLPAIREILRGLENGVKEIQGAKVEDNGFCISVHFRQVHEKDYNVLEEKVKSVLEKNPQFCLTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSNNILPVYIGDDRTDEDAFKAIQSRGQGYPIIVTSVPRETNALYSLRDPSEVLVFLSQLAKWRKTSYSSRPLNFG. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02426 371 FunFam Trehalose 6-phosphate phosphatase 200 276 - -
Seca3g02426 371 NCBIfam HAD-IIB family hydrolase 102 318 IPR006379 -
Seca3g02426 371 SUPERFAMILY HAD-like 101 359 IPR036412 -
Seca3g02426 371 Coils Coil 238 258 - -
Seca3g02426 371 CDD HAD_TPP 101 348 - -
Seca3g02426 371 FunFam Trehalose 6-phosphate phosphatase 100 186 - -
Seca3g02426 371 Pfam Trehalose-phosphatase 103 346 IPR003337 GO:0003824|GO:0005992
Seca3g02426 371 Gene3D - 100 187 IPR023214 -
Seca3g02426 371 Gene3D - 200 367 IPR023214 -
Seca3g02426 371 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 364 IPR044651 GO:0004805|GO:0005992
Seca3g02426 371 FunFam Trehalose 6-phosphate phosphatase 205 363 - -
Seca3g02426 371 NCBIfam trehalose-phosphatase 97 356 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02426 Seca-Chr3 43331385 43341166 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02426 98 367 Trehalose Biosynthesis Gene Families AT1G23870 26.573 3.71e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02426 K01087 - gmx:100819120 595.119