Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02423 ATGGGTTTTATCCCTTCGGGTGGCTCAATCAAGGTCCATACCTTGTTAGTGCTATGTGATGCTCAAGTAGCATTGATTGTCTTTAACGCTAAAGGAAAACTCTTTGAGTTTTCATCTGAATCCAGGCCATCTATAGAATGGAACAAAGGTAATGTTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTCCAGCAACATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGCCATACAGAGTAGAGGGCAAGGTTATCCAATTTTAGTGACTTCAGTTCCAAGAGAAACAGATGCTTTGTACTCTTTGCGTGACCCATCAGAAGTATTAGTCTTATTGTCACAGCTGGCGAAATGGAGGAAAACCTCTTACTCAAGCAGGCCTTTAAATTTTGGTTAA 420 0.3952 MGFIPSGGSIKVHTLLVLCDAQVALIVFNAKGKLFEFSSESRPSIEWNKGNVVEYFLDTLGLSSSSNILPVYIGDDRTDEDAFKAIQSRGQGYPILVTSVPRETDALYSLRDPSEVLVLLSQLAKWRKTSYSSRPLNFG. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02423 139 Gene3D - 11 135 IPR023214 -
Seca3g02423 139 SUPERFAMILY HAD-like 37 127 IPR036412 -
Seca3g02423 139 Pfam Trehalose-phosphatase 42 114 IPR003337 GO:0003824|GO:0005992
Seca3g02423 139 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 40 132 IPR044651 GO:0004805|GO:0005992
Seca3g02423 139 SUPERFAMILY SRF-like 11 44 IPR036879 GO:0003677|GO:0046983
Seca3g02423 139 ProSiteProfiles MADS-box domain profile. 11 41 IPR002100 GO:0003677|GO:0046983
Seca3g02423 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 37 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02423 Seca-Chr3 43228753 43230759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02423 6 57 MADS-box Gene Family AT5G51860 49.057 5.99e-08 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g02423 Trehalose_PPase 7e-15 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02423 K01087 - gmx:100819120 162.54