Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02403 ATGGATAACATAGGGGATCCAAAGAGCCTCATCCATGAGTTACTAAAAGGTTTGGATTTGGCAAGGCAGTTACAAATCTATCTCCACGTGCCTTCTTCCTCTTCTTCTAAAGAAACCCGTGAGGTGTTGATTGAGAACATCATATCCTCATTTGAAAAGGCACTTGAAATGGTAAATTGGAAAGGTCCTGTTGGTGAGTCATCACAACAGCCCTCAGGGGTTGCAATTCGAATGTCAGACTCACCACCTTTGAGTAGTCCCCGAAGTGAAGACTCTGACAAAGATTTGAAGGATCAGGAACAGAATGCTTCTAGAAAGAGTAATCATAACAGAAACATTTTGCCAAGATGGACAAAACAGATTCGAGTTACACCAGGAATGGGAGTGGAAGGGCCTCTTGATGATGGTTATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCCATGTACCCAAGAGGGTACTATAGATGCACCCACAGAAATGTTCAAGGGTGTTTGGCTACAAAGCAAGTGCAAAGATCTGATGAAGACTCAACTATCTTTGAAATCACATACCGTGGAAAGCACACCTGCACAGTGGCCTCCAATATGGTGGGTCCAACATCGAGTCCACGAGAAAACCAAGAATCAAATTCTCACAAACAGAATAAGAATGTCCTGCAAAGCCTTGAACAACAACCAAACGAATCACAACTTTTAAACCACCTGAGGGCAGGGCTGAGAGTCCAAACAGAGAACCTAGATTTCCATTTCACTCCTTCAACTTCCAACATCAAAATTGAAAACCAAATTCTCCCATCCCCTACTATGCTTGAAAACTTCACCTCTCCTTCTTATATATCCCCTGCTACATCAGGGATAAGCCACTTTTCTGTTTCTCCTCCAAGTGGAGTTACGGTGAACACTTCTGCTTCTGGCTCTCATATCAATGACATCATGCCAACTGCTTCAGCTGCAAACTCTCCAACCGTTGGTTTAGAGTTTCCATTTGACCAGTTTGAATTTGACGGCCACAACTTCACATTCGATAACCCACGATTTTTCTCCTGA 1056 0.4299 MDNIGDPKSLIHELLKGLDLARQLQIYLHVPSSSSSKETREVLIENIISSFEKALEMVNWKGPVGESSQQPSGVAIRMSDSPPLSSPRSEDSDKDLKDQEQNASRKSNHNRNILPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGAMYPRGYYRCTHRNVQGCLATKQVQRSDEDSTIFEITYRGKHTCTVASNMVGPTSSPRENQESNSHKQNKNVLQSLEQQPNESQLLNHLRAGLRVQTENLDFHFTPSTSNIKIENQILPSPTMLENFTSPSYISPATSGISHFSVSPPSGVTVNTSASGSHINDIMPTASAANSPTVGLEFPFDQFEFDGHNFTFDNPRFFS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02403 351 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g02403 351 Pfam WRKY DNA -binding domain 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g02403 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 259 IPR044810 GO:0003700
Seca3g02403 351 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g02403 351 ProSiteProfiles WRKY domain profile. 128 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g02403 351 Gene3D WRKY domain 126 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g02403 351 MobiDBLite consensus disorder prediction 87 105 - -
Seca3g02403 351 MobiDBLite consensus disorder prediction 196 220 - -
Seca3g02403 351 FunFam WRKY transcription factor 53 119 196 - -
Seca3g02403 351 MobiDBLite consensus disorder prediction 62 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02403 Seca-Chr3 42755907 42757501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02403 8 250 WRKY Transcription Factor Family AT4G23810 39.015 8.01e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g02403 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02403 - - gmx:100776906 469.544