Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02402 ATGGATGACAGTTTATCTGATATTTTTGAAGAGGGAGAATTCGGGAACAACCAATTTGGTGGAGACGACCTCTATGCCATTTTGGAAAGCCTACAAGACTTCACTGATTTTCCTCTCACTAACCAATTACCTGTTACTAACACTTCCACAAAGTCAAGTGCTCCACAACCACAAGATTCTGAAAATTATGAGCTTGAAACCTCACCCAAAACCAAGAGACAGAAGCTTACCCCAACTTCCTCAGCCTCAGAGGAGCCAAACCAAGATGGACAACAAAGGATATCTCACATCACCGTTGAGCGTAACAGAAGAAAGCAAATGAATGAACACTTGACCGTCTTGAGGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCTACTGCTTCAAGCCCTGGAAGCCAAGAAACAAAGAAAAGTGTACAGTGAAGTACTGAGCCCGAGGGTAGTTTCAAGCCCAAGGCCTTCACCACTTAGTCCTCGAAAACCACCCCTGAGCCCTAGACTAAACTTGCCCATTAGCCCAAGGACTCCACAACCACAACCAGGTAGCCCTTACAAGCCCAGGTACATTTCACCCGTGGCTCTTGACCCATCTCCCACTTCTTCCGCCTCCTCCTCTATCAACGATAATATCAATGAGCTTGTTGCCAATTCCAACTCTCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGCCCGCACGTGCTTTTAAAAACCGTTTCTCAACGGATTCCTGGCCAAGCTCTCAAGATCATAACCGCACTTGAAGATCTCGCGCTTGAGATCCTCCATGTCAACATTAGCAGTACCGCCGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCGGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 963 0.4569 MDDSLSDIFEEGEFGNNQFGGDDLYAILESLQDFTDFPLTNQLPVTNTSTKSSAPQPQDSENYELETSPKTKRQKLTPTSSASEEPNQDGQQRISHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQLLLQALEAKKQRKVYSEVLSPRVVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPQPGSPYKPRYISPVALDPSPTSSASSSINDNINELVANSNSPIADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNISSTADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02402 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Seca3g02402 320 FunFam Transcription factor SPEECHLESS 83 157 - -
Seca3g02402 320 MobiDBLite consensus disorder prediction 42 64 - -
Seca3g02402 320 MobiDBLite consensus disorder prediction 160 224 - -
Seca3g02402 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 167 IPR036638 GO:0046983
Seca3g02402 320 MobiDBLite consensus disorder prediction 72 94 - -
Seca3g02402 320 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Seca3g02402 320 PANTHER TRANSCRIPTION FACTOR FAMA 4 319 IPR044283 GO:0003700|GO:0010052
Seca3g02402 320 SMART finulus 97 148 IPR011598 GO:0046983
Seca3g02402 320 Gene3D - 82 164 IPR036638 GO:0046983
Seca3g02402 320 MobiDBLite consensus disorder prediction 170 204 - -
Seca3g02402 320 MobiDBLite consensus disorder prediction 42 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02402 Seca-Chr3 42725211 42727409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02402 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.852 6.99e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g02402 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02402 K20558 - gmx:100777437 424.476