Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02400 ATGATGGAACAGAACCAGAGTAAGAGTATCCTATGCAAATACACTGTGCATCACAGCGTTACCAAGAAGCTGGTTTCACCCAAGAAACAGAGCAATCCCATAGAGCCAAGAGTGGTTCGGATATCACTCACTGACCCTGACGCCACCGACTCCTCCAGCGACGAAGAAGGAGACTGCTTTGTTCGCCGCAGAACGAAGCGCTATGTCAACCAGATTGAAATCGAAACTACCTCCAAAAACGTCACCGTTCAGAACCCGAGAAAGAGGCCTGCCGGAGAAACCGCTTCAATCCGGCGGCCGGCGAAGGTTTCTGCCGCCTCCAACAATGGAAGAAAGTTCCGTGGCGTTAGGCAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCTGCAAGGAGGGTGAGGCTCTGGTTAGGTACCTACGACACTGCAGAAGAAGCAGCTATGGTGTATGACAATGCCGCGATTAGGCTTCGAGGACCTGATGCTTTGACAAACTTCGTCACACCGCCGCAGAAGGAAACCCCTCCGCCCGAGGCGGCGGCGGAGGAGCCGGCAGCCGTGAAACCAGAAATGAAGGTCGTTGTGGAGGAAGAAGCCTCCGGTTCCGGTTACGATTCCGGCGATGATCAGTGTCTGAACCTTTCATCTCCCACTTCGGTGCTCCAATTCCGAAGCAACTCGAGCGAGTCGCAAAAACCGGTCGAACCGGAGGAAGCGTACGAACCGGAGGTAGTGTCAGAGGTTTTCAGAGAGTGCGAAGGAGAGACGAGTTTGTTCGATGAGAGTGGGCAGTTTTTCCAGCTGGATAATATGGATATGGACATGGCTGTTTGGGATGATGTGTTCAATTTCAAAACCCCAGAGTACCCTATGCTTTTTGAAGAAGAACAACCACAAATGTTCGACGAAACGACGCCGTTTTCCTCAGAGGAAGATTTCATTGACAGCATTGTCCTTGCTGATTCTCTCATCGATTTTGATAAAGCCTGTCCTTCTCCCTCCTCTCCTTCTTCCTTGTGCCAAGTGGACGATTACTTTCAAGATATTTTGTTAGGCTCAGATCCTCTTGTGGTTCTCTAA 1086 0.512 MMEQNQSKSILCKYTVHHSVTKKLVSPKKQSNPIEPRVVRISLTDPDATDSSSDEEGDCFVRRRTKRYVNQIEIETTSKNVTVQNPRKRPAGETASIRRPAKVSAASNNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPQKETPPPEAAAEEPAAVKPEMKVVVEEEASGSGYDSGDDQCLNLSSPTSVLQFRSNSSESQKPVEPEEAYEPEVVSEVFRECEGETSLFDESGQFFQLDNMDMDMAVWDDVFNFKTPEYPMLFEEEQPQMFDETTPFSSEEDFIDSIVLADSLIDFDKACPSPSSPSSLCQVDDYFQDILLGSDPLVVL. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02400 361 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
Seca3g02400 361 MobiDBLite consensus disorder prediction 170 189 - -
Seca3g02400 361 MobiDBLite consensus disorder prediction 224 244 - -
Seca3g02400 361 MobiDBLite consensus disorder prediction 23 57 - -
Seca3g02400 361 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Seca3g02400 361 MobiDBLite consensus disorder prediction 81 114 - -
Seca3g02400 361 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 262 - -
Seca3g02400 361 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Seca3g02400 361 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Seca3g02400 361 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Seca3g02400 361 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Seca3g02400 361 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Seca3g02400 361 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Seca3g02400 361 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02400 Seca-Chr3 42665152 42666237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02400 12 353 AP2-EREBP Transcription Factor Family AT4G27950 39.385 1.48e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g02400 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02400 - - gmx:100807598 405.986