Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02389 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTATCTTAATATCTCCTTGTTTCCAGCCATCTATGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCTCCAACTCTGCTACTGCCTTCTCTTCATGGGATCCAACCCACAAAAATCCTTGCAGATGGGATTATATAAAATGTTCCAAAGAAGGGTTTGTTGCAGAGATCATAATAACATCCATTGATCTTCGTAGCAGCTTCCCTACACAGTTCCTTTCTTTTAGCAATCTTACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTGAGATTCCAAGTTCTGTGGGAAACTTGTCCTCTCTGGTTACTCTGGACCTTAGCTACAACACTTTATCAGGAACAATTCCAGAAGAAATAGGAAAGCTATCTAAACTGCAGTGGTTAGCATTGAATTCAAATTCCTTACATGGTGGAATTCCAACCACAATTGGAAACTGCTCAAGGCTTCAGCAGCTGGCACTGTTTGACAACCAGCTTTCTGGTATGATTCCTGGAGAAATAGGCCAGTTGAAGGCTCTTGAATCTCTAAGAGCAGGTGGAAATACAGGGATTCATGGTGAAATTCCAATGCAAATATCAGATTGTAAGGCTCTGGTTTATCTGGGACTTGCAGTTACAGGGATATCTGGGGAGATTCCACCAACTATAGGAGAACTTACAAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTAACATCCCACCAGAGATTCAAAACTGCTCATCCTTAGAAGATTTGTTCCTGTATGAAAACCAGCTTTCTGGAAATATTCCTGATGAATTGGGTTACATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAAAACAATTTGACTGGCACCATTCCAGAAAGTCTTGGAAACTGCACAAATCTGAAGGTTATAGATTTCTCTTTGAATTCTCTGGGTGGTCAGTTACCTGTGACTCTCAGTAATCTACTGTCATTGGAGGAATTTCTTTTGTCTGATAATAACATTTATGGAGAAATACCTTCCTATATTGGAAATTTTTCCAGGCTGAAACAACTTGAATTGGATAACAACAAATTCTCTGGTGAGATTCCACCTGTTATGGGGAAACTGAAGGAACTTACCCTCTTCTTTGCCTGGCAGAATCAACTCCATGGAAGTATACCAACAGAACTATCCAACTGTGAAAAACTTGAAGCAATTGATCTTTCACACAATTTCCTCACTGGTCCAATTCCAAATTCACTCTTTCATCTAAAGAATTTAACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGGCAAATTCCACCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTTACAGGTCAACTTCCACCAGAAATAGGTCTTTTAAGCAGTTTGAGCTTTCTTGAGTTGTCAGATAATCTACTCAGTGGAGATATTCCCTTTGAGATAGGTAACTGTGCTCATCTAGAAATGCTTGACTTGCACAGCAATGAGCTGCAAGGAACCATTCCTTCCTCATTAAAATTCCTAGTTGGTCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTACATCTTTAAATAAGTTGATTCTAAGTGGAAACCTCATCACTGGTTTGATCCCTAAGTCACTAGGCCTTTGTAAGGATTTGCAGTTGCTGGATTTAAGTAACAATAGGATCACAGGTTCCATTCCGGATGAGATTGGTCAGTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTTTCTATCTTGGATCTCTCTCACAATAAGCTCACAGGTACCCTCAGAGTACTGGGTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATTGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCTCCTGCTGCATTTGCTGGTAACCCTGAGCTTTGCATTAACAAGTGTCATGCAAGTGAGAATCGCCAAGGCATCAAGTCAATAAGAAATATTATCATCTACACATTCCTTGGGGTTATTTTAACTTCTATTTTTGTCACTTGTGGAGTGATTTTAGCTCTCAGGATTCAAGGGGACAGTTGTGGGAGGAATTTTGATGAAGGTGGTGACATGGAATGGGCTTTCACTCCATTCCAAAAGCTCAACTTCTCCATCAATGACATTGTCACAAAGTTGTCAGATTCAAACATTGTTGGAAAAGGTTGCTCAGGAGTTGTTTATCGTGTAGAGACTCCAATGAAACAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGACCTATTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGGCATAAAAATATAGTGAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATTTGTAATGGGAGTTTATTTGGATTACTCCATGAAAAGAGGTTGTTCTTGGAATGGGATGCAAGGTATAAGATCATACTAGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTAGTGAGTTCTTCAGAGTGTTCAGGAGCTTCTAATATAGTTGCAGGTTCTTACGGTTACATAGCTCCAGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTGTACAGTTATGGTGTTGTGCTTCTTGAGGTCTTAACGGGGATGGAGCCAACAGATAACAGGATTCCAGAGGGTGCCCACATTGTCACTTGGGTTACCAGTGAAATCAGAGAGAAGAAAAGAGAATTTACATCTATCCTTGACCAACAACTAGTATTGCAGTGTGGAACAAGAACCCCAGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCAGAAGAACGGCCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTTGAGAAACCAAATTTTCTCCATAAAGGCATGGTTACCAATCCAAAAGCAGCAGTTCACTGTTCTAGTTTCTCTAGATCATGTGAACCTTTGATAGAATCATCATCTTCTTCTTCATAA 3261 0.4048 MSSNALTLFILYLNISLFPAIYALNQEGLSLLSWLSTFNSSNSATAFSSWDPTHKNPCRWDYIKCSKEGFVAEIIITSIDLRSSFPTQFLSFSNLTTLVISNGNLTGEIPSSVGNLSSLVTLDLSYNTLSGTIPEEIGKLSKLQWLALNSNSLHGGIPTTIGNCSRLQQLALFDNQLSGMIPGEIGQLKALESLRAGGNTGIHGEIPMQISDCKALVYLGLAVTGISGEIPPTIGELTNLKTLSVYTAHLTGNIPPEIQNCSSLEDLFLYENQLSGNIPDELGYMQSLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGQLPVTLSNLLSLEEFLLSDNNIYGEIPSYIGNFSRLKQLELDNNKFSGEIPPVMGKLKELTLFFAWQNQLHGSIPTELSNCEKLEAIDLSHNFLTGPIPNSLFHLKNLTQLLLISNRLSGQIPPDIGSCTSLIRLRLGSNNFTGQLPPEIGLLSSLSFLELSDNLLSGDIPFEIGNCAHLEMLDLHSNELQGTIPSSLKFLVGLNVLDLSANRITGSIPENLGKLTSLNKLILSGNLITGLIPKSLGLCKDLQLLDLSNNRITGSIPDEIGQLQGLDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLRVLGSLDNLVSLNVSYNCFSGSLPDTKFFRDLPPAAFAGNPELCINKCHASENRQGIKSIRNIIIYTFLGVILTSIFVTCGVILALRIQGDSCGRNFDEGGDMEWAFTPFQKLNFSINDIVTKLSDSNIVGKGCSGVVYRVETPMKQVIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHEKRLFLEWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASNIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVTSEIREKKREFTSILDQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKGMVTNPKAAVHCSSFSRSCEPLIESSSSSS. 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02389 1086 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Seca3g02389 1086 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Seca3g02389 1086 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Seca3g02389 1086 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02389 1086 Gene3D Ribonuclease Inhibitor 427 695 IPR032675 -
Seca3g02389 1086 SMART LRR_typ_2 285 309 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 429 453 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 573 597 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 622 644 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 549 572 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 645 678 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 116 140 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 477 501 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 333 357 IPR003591 -
Seca3g02389 1086 SMART LRR_typ_2 525 548 IPR003591 -
Seca3g02389 1086 SUPERFAMILY Protein kinase-like (PK-like) 750 1047 IPR011009 -
Seca3g02389 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Seca3g02389 1086 SMART LRR_sd22_2 333 359 - -
Seca3g02389 1086 SMART LRR_sd22_2 549 570 - -
Seca3g02389 1086 SMART LRR_sd22_2 573 594 - -
Seca3g02389 1086 SMART LRR_sd22_2 116 139 - -
Seca3g02389 1086 SMART LRR_sd22_2 622 647 - -
Seca3g02389 1086 SMART LRR_sd22_2 525 548 - -
Seca3g02389 1086 SMART LRR_sd22_2 381 407 - -
Seca3g02389 1086 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Seca3g02389 1086 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Seca3g02389 1086 Pfam Leucine rich repeat 604 656 IPR001611 GO:0005515
Seca3g02389 1086 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Seca3g02389 1086 Pfam Leucine rich repeat 93 153 IPR001611 GO:0005515
Seca3g02389 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Seca3g02389 1086 Gene3D Ribonuclease Inhibitor 282 361 IPR032675 -
Seca3g02389 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 387 1039 - -
Seca3g02389 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Seca3g02389 1086 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02389 1086 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Seca3g02389 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Seca3g02389 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Seca3g02389 1086 SUPERFAMILY RNI-like 81 395 - -
Seca3g02389 1086 Gene3D Phosphorylase Kinase; domain 1 741 841 - -
Seca3g02389 1086 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Seca3g02389 1086 SUPERFAMILY RNI-like 325 663 - -
Seca3g02389 1086 Gene3D Ribonuclease Inhibitor 362 426 IPR032675 -
Seca3g02389 1086 PRINTS Leucine-rich repeat signature 622 635 - -
Seca3g02389 1086 PRINTS Leucine-rich repeat signature 576 589 - -
Seca3g02389 1086 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02389 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02389 Seca-Chr3 42441357 42445807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02389 22 1076 Receptor kinase-like Gene Family AT5G56040 47.694 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g02389 Pkinase 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02389 - - gmx:100807225 1890.16