Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02379 ATGATGGAAGACACGGGTAATAGGGTTAATGAGGGTGAAGCTGAAGATGCAAATAATTTGAAGTCCCCTGATGAAGAAAATGCTTGTTCTGTTGAGGATGTTACTGATGTATACAAAAGGATTTCTGAGTTAACTGATGATGACATTAGAATCCTTGAGTTCGATTCTGAACTGGATGGGTATAATTTTTATTCTGAGTATGCTAAATTCAAAGGTTTTGCGGTTAGGAAAGATGATGTTTATCGTGATCGTAATAGGTTAATTACCATGAGGCAATTAGTTTGTAACAGACAGGGGGAAAGGAGTGAGAAGCATTTAAATAGGGCTGACAGAATTAGGGAAGCTAAGGCAATTACTCGTACCAATTGTCATGCAAGGCTTCGACTGTATTTTGATAAAAACAGTGGGAAGTGGAAGGTTGGAATTTTTGATCCAGAACACAATCATGAGCTTACTCCTTCAAATATGGTTCATTTGATGCCTGCATATCGTGGGTTGAGTGTTGCTGATAAGGCACAAGTAAATAGTCTTCACTTATATGGTGTTAGGACTTGTCATATAATGGGTTTAATAATGGGTCAGAAAGGTGGTCACTCAGATTTGGGTTTTTGTAAGAAGGACTTGTACAATCACATTGACAAGGAAAATAGGGCCAAAATACAGGATGGAGATGCTTTTGCTGCTTTGTGCTATCTTCAAGCTAAGTTTGATAGTAATCCAATGACATTCGTTAAGTTCACTACTACTGAAGATGATAGGCTTGAAAACTTGTTCTGGGCTGATGTAGGAAGTAGAATTGATTATGCTTGTTTTGGTGATGTAGTCGCATTTGACACAACTTATAAAAAAAACAAGTATAACAGGCCTTTAGTAATTTTTTGTGGTTATAATCATCATGGGGAAACCACAATTTTTGGTTGTGCTCTTGTGTCTGATGAGAAGACAGAAACTTATAAATGGGTACTTGAATCTTTTCTGGAAGCTATGTTTAATAAATTTCCTAAGGCAGTTGTTACAGACGGGGATGGTGCAATGCGTGAAGCTATAAGATCTGTGTTTCCAGATTCTATCCACAGGTTGTGTTCATGGCATCTTCACCAGAATGCTTGTGAGAATGTCAAGAATCCCAAATTTTTGGAAGATTTTAAGAAGTTAATTTATGCCAATTATACTCCTGAGAAATTTGAGCAACAGTGGGTACAAGTCATTGAGAAACATGGTCTGAGCAACAATATGTGGGTGCTGAAGGTGTATGACCTCAAGAGAATGTGGGCTACCACTTTTTTCAGAGATAACTTTTTTGCTGGTGTCCGGACTACCTCCATTTGTGAAGGTATTAATTCTTTTATCAAGAGATATGTACAGAGTAAAAACAGTCTCGTTGATTTTCTACACAATTTTGAAAGAGCTTTGAATGAATATAGGCACAATGAATTAGCTTTTGATTTTAAATCCTCATACACCCAGCCAGTTCTGACAACTGCTTTGGAAAAGACTGAGGTAGGTAATGTTGTTACATTGAAGATGAATAAATTTGGAAGTCCTGATTCTGTATACCTTGTTTTGTTTGATAAGTCTGTTGGTAAGTTTGTATGTGATTGTCGGTTGTTTGAGTCATGTGGTTTACCATGTTCACATATCTTTTGTGCTATGAAGCATGAGCAAATAGAGTCAATTCCTCCTTCACTCATCTGCAAAAGGTGGACTAAGTTTGCTAAGGTTGATTATATTTCTACAATTTATGCTGATGAGGGTGATACTACAAAGAAGGAAGTGTTGAGGTCCGGTGCTGTGGGTGCTGCTTGTAATAGGCTTAACAAGGCTGCACATAAAGATCCTCATAATTTTGTGAAAAACATTGAGGCCATCCATCAATTAGCAGACCAGATGGAAAGGCAAGATGGGGTTGATGTCAACATTGCTGACATATCAAGGGTTGTCCGTGATCCAACTATTGTTAAAACCAAAGGTGCACCCCGTAAGAGTAAGAAAATCATGAAAAGAAGAAAATGCTCTTATTGTAAGCGTGTTGGGCATACAATCAGGACTTGTTCCAAGTTCTCAACGCGAGATCAGCTGCATACTGTAGAAGAAGAGGAGTCTTCAGTTGAGAGTGATGGAGAATCAAGAGATTTAACGGATACACATAGTCATGTGAATACAAACCGTAGTAATGGTGTAAGTCTATCTGCACATGGGAAGAGTACATCAGGACAGGGTCCAGTGATAGGTAAAAAGTCTAATAAGAGGATGAAACACAATGATGGTGTGAAGTTAACTCAAGAGTCTGTAAATGATGGCCCACAAGTTAGAAATGTTGATAATATGGATTGTTCAAGGTCAATTGAACATGTGAATCAAATGAGTGAACAGGACAGAGGTGTCAATGGTGATTTGAGATTTGTCTATAATGATTTTAGGTTCACAGGAACTTATCAATATCAGTCGTCAATGTTACCACACTTTGGTCATGCACCTTTCAGCAGCAGATTACTGCCAAACTATCCTTATATTCCGGTGCAACAACCTTTCAGTAACACTGGTGCATTACACGAAATGAATACATTTGGTTCACATCATGCACGGGAATTTACTGCAGCTTTAATTGAAGTTCAGAGGAAAGCAGGTGTTGGCATCAGTTTCCTCAATCCAAGAGAAAAATGA 2664 0.3806 MMEDTGNRVNEGEAEDANNLKSPDEENACSVEDVTDVYKRISELTDDDIRILEFDSELDGYNFYSEYAKFKGFAVRKDDVYRDRNRLITMRQLVCNRQGERSEKHLNRADRIREAKAITRTNCHARLRLYFDKNSGKWKVGIFDPEHNHELTPSNMVHLMPAYRGLSVADKAQVNSLHLYGVRTCHIMGLIMGQKGGHSDLGFCKKDLYNHIDKENRAKIQDGDAFAALCYLQAKFDSNPMTFVKFTTTEDDRLENLFWADVGSRIDYACFGDVVAFDTTYKKNKYNRPLVIFCGYNHHGETTIFGCALVSDEKTETYKWVLESFLEAMFNKFPKAVVTDGDGAMREAIRSVFPDSIHRLCSWHLHQNACENVKNPKFLEDFKKLIYANYTPEKFEQQWVQVIEKHGLSNNMWVLKVYDLKRMWATTFFRDNFFAGVRTTSICEGINSFIKRYVQSKNSLVDFLHNFERALNEYRHNELAFDFKSSYTQPVLTTALEKTEVGNVVTLKMNKFGSPDSVYLVLFDKSVGKFVCDCRLFESCGLPCSHIFCAMKHEQIESIPPSLICKRWTKFAKVDYISTIYADEGDTTKKEVLRSGAVGAACNRLNKAAHKDPHNFVKNIEAIHQLADQMERQDGVDVNIADISRVVRDPTIVKTKGAPRKSKKIMKRRKCSYCKRVGHTIRTCSKFSTRDQLHTVEEEESSVESDGESRDLTDTHSHVNTNRSNGVSLSAHGKSTSGQGPVIGKKSNKRMKHNDGVKLTQESVNDGPQVRNVDNMDCSRSIEHVNQMSEQDRGVNGDLRFVYNDFRFTGTYQYQSSMLPHFGHAPFSSRLLPNYPYIPVQQPFSNTGALHEMNTFGSHHAREFTAALIEVQRKAGVGISFLNPREK. 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02379 887 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g02379 887 Pfam MULE transposase domain 274 368 IPR018289 -
Seca3g02379 887 SMART 26again6 530 557 IPR006564 GO:0008270
Seca3g02379 887 Pfam FAR1 DNA-binding domain 62 152 IPR004330 -
Seca3g02379 887 MobiDBLite consensus disorder prediction 691 717 - -
Seca3g02379 887 ProSiteProfiles Zinc finger SWIM-type profile. 519 555 IPR007527 GO:0008270
Seca3g02379 887 MobiDBLite consensus disorder prediction 718 743 - -
Seca3g02379 887 PANTHER OS01G0519700 PROTEIN 505 686 - -
Seca3g02379 887 MobiDBLite consensus disorder prediction 690 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02379 Seca-Chr3 42314555 42317656 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02379 MULE 3.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02379 - - tpra:123910662 748.429