Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02351 ATGGTACCTCCGGGTCCAGGACCACCAACTCCCATTGGTGGTGCCCCGTCTGTTTCACCCTCTCTTTTGAGATCAAATTCAGGGATGTTAGGAGGTCAAGGGGGTCCCCTGCCTTCGCAGACATCTTTCCCTTCGCTTGTGTCTCCTCGTACTCAGTTCAACAACATGAATATTCTAGGAAATATGTCCAATGTAACTTCTATACTGAATCAATCTTTCCCCAATGGAGTTCCAAATCCTGGGCTCACTGGTCCAGGAAGTAGCCAGCGTGGAGGGATTGATACTGTTGCTGAAACTGATCCACTCTCCAGTGTTGGCAATGGAATGAACTTCAGCAATTCTTCATCCTCATTTGTACAATCAAATATGGTGAATGCTGGCCCCTCTGGTCAGGGTCAGGGTCAACAATTTTCAAACCCTTCTAGTAACCAGCTGTTGCCAGATCAACAACATTCCCAACAGCTTGAACCTCAAAATTTCCAACACAGTCAGCAGTCAATGCAACAGTTCTCTGCTCCTCTGAATACACAGCAGCAGCATTTTCAGTCAATTCGAGGAGGGATAGGTGGTATGGGACCAGTGAAGATGGAGCCCCAGGTAAACAATGATCAACTTGGACAGCAACAGCAGCAGCAGTTGCAATCTTTAAGGAATCTTGCTCCAGTGAAATTGGAACAACAACAAATGCAGACAATGAGAACTCTGGCACCAGTTAAAATGGAGCCCCAGCATTCTGATCAACCATTATTTTTGCAGCAGCAACAGCAGCAGCAACAGCAGCAATTCCTCCACATGTCAAGGCAATCTTCTCAGGCTGCTGCTGCTCAGATCAACCTTTTACACCATCACAGGCTTTTGCAGTTACAACAACACCAACAACAACAACTCCTTAAGGCAATGCCTCAACAACGGCCTCAACTACCACAGCAATTTCAACAGCAGAATATGCCTGTAAGGTCTCCTGTGAAGCCAGTATATGAACCGGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAATATCGAGTTCTGGAGGAAGTTTGTAGCTGAGTATTTTGCTCCTAATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGCAGACAAACTACTGGTGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAACCTGGCCGTGGCTTTGAAGCAACTGTTGAGGTTCTTCCCAGGCTTTTCAAGATAAAGTATGAAAGTGGTACTTTGGAAGAGCTACTTTATATTGACATGCCCCGTGAATATCATAATTCCTCTGGCCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCTCGGCGCCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAGCTTGGAGCGGTTGCTCAAAAATACCAGTCTTTTACTCAAAATGCAACACCCAATATATCTGCTCCAGAGTTACAAAATAATTGTAACATGTTTGTTGCATCAGCCCGTCAATTGGCTAAAGCCTTAGAAGTTCCATTAGTTAATGACTTAGGATATACAAAGAGATATGTGCGCTGTCTACAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTACAGCAGAGAAACAGGAACTGGACCTATGGAGAGCTTAGCCAAATTCCCCCGGAGAACAAGTGGTTCAGTTCGTAGTCAAGCACAACAGCATGAAGATCAATTACAGCAGCAGCAGCAGCAAATGGTGGCTCATAACTCAAATGGTGATCAAAACTCAGCACAAGCTTCTGCCATGCAAATTGCTTCAAGCAATGGTATGGTTAGTGTAAATAACTCTGTCAACTCAGCATCCGCATCAACCACCACAAGCACTATCGTTGGACTTCTCCACCAGAACTCTATGAATTCTCGACAACAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAGTTCTGTTCAGATTCCATCCCCAGGTTCCTCCAGTACTGTGCCACAGGCTCAACCAAACTCATCTCCTTTTCAATCACCGACACCATCCTCATCTAACAACCTCCCACAAACATCTCACCCTGCTTTAACATCTGCCAATCACATGAGTACAACAAACTCACCAGCTAATATTTCCTTACAACAACAGCCATCTATTTCTGGTGAAGCTGACACTAGCGATGCTCAGAGTTCAGTCCAGAAAATCATACATGAGATGATGATGTCCTCCCAGATTAATGGCACAGGTGGAATGGTAGGTGTTAATTCTCTTGGAAATGACCTGAAAAATGTAAATGGTATTCTGCCAGGGAGTGGTAATACAGGGCTCAACAGTGGCCACGGCAGCATGGTGAGCAATGGCACACTGAACAATAATTCAGGTGTTGGGGTTGGTAGTTATGGAACAATGGGTCTTGGTCAGTCTACTATGCCTAATGGAATCAGAGCTGCTATGGTAAATAATTCAATCATGAATGGAAGGGGAGGAATGGCTTATATTGCTCGGGATCAAGCTATGAATCATCAACAGGATTTGTCAAACCAACTACTTAGTGGGTTAGGAGCAGTAAATGGTTTTAGTAATCTTCAATTTGATTGGAAACCTTCACCTTGA 2715 0.4379 MVPPGPGPPTPIGGAPSVSPSLLRSNSGMLGGQGGPLPSQTSFPSLVSPRTQFNNMNILGNMSNVTSILNQSFPNGVPNPGLTGPGSSQRGGIDTVAETDPLSSVGNGMNFSNSSSSFVQSNMVNAGPSGQGQGQQFSNPSSNQLLPDQQHSQQLEPQNFQHSQQSMQQFSAPLNTQQQHFQSIRGGIGGMGPVKMEPQVNNDQLGQQQQQQLQSLRNLAPVKLEQQQMQTMRTLAPVKMEPQHSDQPLFLQQQQQQQQQQFLHMSRQSSQAAAAQINLLHHHRLLQLQQHQQQQLLKAMPQQRPQLPQQFQQQNMPVRSPVKPVYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYIDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQSFTQNATPNISAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSVRSQAQQHEDQLQQQQQQMVAHNSNGDQNSAQASAMQIASSNGMVSVNNSVNSASASTTTSTIVGLLHQNSMNSRQQNSMNNASSPYGGSSVQIPSPGSSSTVPQAQPNSSPFQSPTPSSSNNLPQTSHPALTSANHMSTTNSPANISLQQQPSISGEADTSDAQSSVQKIIHEMMMSSQINGTGGMVGVNSLGNDLKNVNGILPGSGNTGLNSGHGSMVSNGTLNNNSGVGVGSYGTMGLGQSTMPNGIRAAMVNNSIMNGRGGMAYIARDQAMNHQQDLSNQLLSGLGAVNGFSNLQFDWKPSP. 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02351 904 Pfam LIM-domain binding protein 334 588 IPR029005 -
Seca3g02351 904 MobiDBLite consensus disorder prediction 1 15 - -
Seca3g02351 904 MobiDBLite consensus disorder prediction 594 635 - -
Seca3g02351 904 MobiDBLite consensus disorder prediction 578 635 - -
Seca3g02351 904 MobiDBLite consensus disorder prediction 672 765 - -
Seca3g02351 904 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g02351 904 Coils Coil 596 623 - -
Seca3g02351 904 MobiDBLite consensus disorder prediction 70 175 - -
Seca3g02351 904 PANTHER LIM DOMAIN-BINDING PROTEIN 204 893 IPR029005 -
Seca3g02351 904 MobiDBLite consensus disorder prediction 19 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02351 Seca-Chr3 41757334 41765085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02351 8 900 C2H2 Transcription Factor Family AT1G43850 61.283 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02351 - - gmx:100799771 1392.87