Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02349 ATGTCATTAGTCAGATCTGCTAAGCTAGCTCCTACATCGTATAAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATGTTAGACCTGATGTGTCCTCCCAAAGTTGCGGTCCTCCTCATAAGCATAGAAGCATGTATACAGATACTTACTCCAGCGAGAGTTATGAGAAGTACTTCCATGACTCACAAACAGAAGAACTGATAGAACCATCTAGTTCTGGCATCTCTAGCAGTTCAATTCACCCTGATGGTGCCTCTTCTTACCAGCTCAGAGCTAGTTCAGGAGCTTCTATGGTTGCTGATGATCTATCTGATACTTCTTTAATGTCTACAAGGCATCATAATGCTTATCAGTCCATTGGATCAGATTTTTTGGAAAATGGAAGCTTGGATTCACTTGATGATGATGGTCTAATGAGATTAAAACTACAAGCTTTGGAGAGGGCATTGCTTGATGATAGTGGTGCTGAGGAGGAGGAGGAAGAAGAAGACGACATATTTGGGACTGCTCAAAGCATGGAAATTGATCCTGATATTGCTGAGTGGGCTGATCCCATTCAGAATATGCTGCTCCATGACTCACCAAAGGAGTGTTCATCTTCAGATTCCAATATTAGCAGTATCAGTAGCACCAAAGAGATATCACAAATTTCTCAGACCCCCAAGAAACTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGGTGTGGAAGCCTCATCAATGATAAATGATCTCCGGCAGATGGTCTCAATTCAAGGAGAGCCTACCCAAAGAATTGCAGCCTATATGGTGGAGGGACTCGCAGCTCGCCTGGCTGAATCTGGCAAAAGTATTTATAAAGCTCTGAAATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCAGCCATGCAGATATTGTTTGAGATTTGCCCATGTTTTAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAGGCAGTTAAAGACGACAAGAAGATTCATATAATAGATTTTGACATCAATCAAGGAAATCAGTACATAAATCTAATTCAAACACTTGCTTCAAGGTCCAGTAAGCCATCCCATGTTAGATTGACTGGGGTCGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAAGATCATTGGACAAAGACTTGAAAAACTGGCAGAGGCACTCGGGTTGCCATTTGAGTTTCAAGCAGTGGCTTCGAGGACTTCTATTGTTACCCCATCGATGTTCAACTGTCGTCCTGGAGAAGCCCTTGTTGTAAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAATGAACGAGACCAACTTCTTCGCTTGGTGAAGAGCCTGAATCCAAAGCTTGTAACGGTTGTGGAACAAGATGTAAACACTAACACCACCCCCTTCTTACAGAGATTTGTAGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCGCTTGATATTACTCTTCCTAGAGAAAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCAAGAGACATTGTCAATGTTGTTGCATGTGAAGGTGAGGATAGGATAGAACGGTATGAAGTTGCGGGAAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTCCATCCCCAATGAGCACGAATGTGGCTGACGAAATCCGAAAACTCATTAAGCTGTACTGTGACAAGTACAAGATAAAGGAGGAAATGGGTGCACTTCATTTTGGTTGGGAAGACAAAAATTTGATTGTTGCTTCAGCATGGAGGTGA 1776 0.4251 MSLVRSAKLAPTSYKNAKLYSLKGTDVRPDVSSQSCGPPHKHRSMYTDTYSSESYEKYFHDSQTEELIEPSSSGISSSSIHPDGASSYQLRASSGASMVADDLSDTSLMSTRHHNAYQSIGSDFLENGSLDSLDDDGLMRLKLQALERALLDDSGAEEEEEEEDDIFGTAQSMEIDPDIAEWADPIQNMLLHDSPKECSSSDSNISSISSTKEISQISQTPKKLLYECAIALSEGNGVEASSMINDLRQMVSIQGEPTQRIAAYMVEGLAARLAESGKSIYKALKCKEPPSSDRLAAMQILFEICPCFKFGFIAANNAITEAVKDDKKIHIIDFDINQGNQYINLIQTLASRSSKPSHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALGLPFEFQAVASRTSIVTPSMFNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLQRFVEAYNYYSAVFESLDITLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTPSPMSTNVADEIRKLIKLYCDKYKIKEEMGALHFGWEDKNLIVASAWR. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02349 591 Pfam GRAS domain family 223 591 IPR005202 -
Seca3g02349 591 ProSiteProfiles GRAS family profile. 212 591 IPR005202 -
Seca3g02349 591 MobiDBLite consensus disorder prediction 65 88 - -
Seca3g02349 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 196 586 IPR005202 -
Seca3g02349 591 MobiDBLite consensus disorder prediction 63 88 - -
Seca3g02349 591 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02349 Seca-Chr3 41739185 41743511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02349 1 591 GRAS Transcription Factor Family AT1G21450 61.204 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g02349 GRAS 2.7e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02349 - - gmx:100798897 965.681