Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02346 ATGTCTCAGGGAAGAGGCAGTGCATTTTTACCTATGGTTATGGTCACTGTGATTTCACTACTGTGCTTGTTGGTTCTGGTGGAACGTGCTAATGCAGCAACTTACACCGTTGGAGGACCTGGGGGCTGGACCTTCAACACTGATACTTGGCCCAATGGAAAAAAGTTTAGAGCTGGTGATGTGCTAATCTTCAACTATGACTCAATGACACACAATGTGGTTGCTGTGGACAGAAGCGGATACAGCAGCTGCAATTCACCGGCAGGGGCTAAAGTGTTCAGTTCAGGGAAGGACCAAATCAGACTAGCCAGAGGACAGAACTACTTCATATGCAACTATCCTGGTCACTGCCAATCTGGTATGAAGGTTGCCATCAATGCAATATGA 387 0.4677 MSQGRGSAFLPMVMVTVISLLCLLVLVERANAATYTVGGPGGWTFNTDTWPNGKKFRAGDVLIFNYDSMTHNVVAVDRSGYSSCNSPAGAKVFSSGKDQIRLARGQNYFICNYPGHCQSGMKVAINAI. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02346 128 CDD Plantacyanin 33 127 IPR041844 -
Seca3g02346 128 FunFam basic blue protein-like 33 127 - -
Seca3g02346 128 ProSitePatterns Type-1 copper (blue) proteins signature. 105 121 IPR028871 -
Seca3g02346 128 Pfam Plastocyanin-like domain 43 121 IPR003245 GO:0009055
Seca3g02346 128 SUPERFAMILY Cupredoxins 33 127 IPR008972 -
Seca3g02346 128 ProSiteProfiles Phytocyanin domain profile. 33 128 IPR003245 GO:0009055
Seca3g02346 128 Gene3D - 33 127 IPR008972 -
Seca3g02346 128 PANTHER BLUE COPPER PROTEIN 27 126 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02346 Seca-Chr3 41687010 41688190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02346 1 128 Phytocyanin Superfamily AT1G17800 40.876 5.68e-28 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02346 - - gmx:100788635 233.032