Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02339 ATGGAGAGCCGTCCTCCTCCGTCTTACATTGTGGTTGCGGCTGATGCCACCAGGGACCGCAATGAGCAAGAGATCAAGCTCATCGTTGATCACATTCGGGCCAGGGGTGACATTCTCTCTGCTCGTGACAGGTTGCTTCTGCTCTGTGTCTTGCATAAGGTGTCTCACCCAATGGGGTACCAGACATTAGCATGCCCAGAGTCTTTTTCTGGCACGAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAGAAAGTGGATTTATATGCAAATGAGCTTTTATCAAGTTATGAAGATTTTGAAAATGAAGGGGTTAGTATTGACATTCAAGTCACTGCGGGTTTTCCAATTAGACAGGTTATTTTACAAGAGGTTACAAACTATAATGCATCTTGGATTATACTAGATAGACATCTTCGGCGCGACCTGAGATACCACCTTAACAAGATGCCATGTAAGGTTGCATTGGTTAAAGATGACTTATCTGTGGAAATATGGAGATCTCATTGTTCACAAGACACAATTGTCACAGAAACAAAGCTTATCTATTCATTGTCCAAGTTCGTGTCACTATCAGATTGTCATAATAATCAAGACTTCGAGCAGTCTATTTACTCTTGCAAAAGTTATCCCCATTCCATAACTTCTTCTGATACCTCTAGTACCATTAAGAGCTATACAAAGCATTCATATGCTAACAGGTCACGAGATCACAGTTGTTTATTAGATTTTGGATCTTCTTCTAAGCATGAAAGATCAGGCATAAGCATCACAGGAGAATATAGACATTTCATTACTTCTCAGATTGGCCAAAAGCAAAACCAATGTGGCTTTCTACCAAAATCTTCAGATGCACCAATTCTTTGTGCTGGCTGTGGGACAAAGACTGAGTTATCTATCAAGGAGTCAATGAGGTTCAACTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAGTAGGTGAAGGTGGATATGGTCATGTATACAAGGGTGTGCTTAAAGATGGACAGCAAATTGCTGCAAAGGTAAGGAAAGAAGAAAGTACACAAGGGTTTTCTGAATTTCATTCTGAGGTTTATGTCTTAAGTTTTGCTCGACACAAGAATATAGTGATGCTGCTGGGTTACTGTTGCAAAGAGAAGAAGAATATTCTGATATATGAATATATTTGCAATAAGTCTCTTCATTGGCATTTATTTGAAAATACTGCAGCAGTTCTTGATTGGCCCCAAAGGTATGCTATTGCCATTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGCCCTATTATTCATAGAGACATGCGACCAAGAAATATACTACTCACTCATGATTTTGTTCCCATGCTAGGTGACTTTGGCCTTGCCAAATGGAAAACTGGCGATGATCCTCTACAAACAAGGATAATGGGCACTTTAGGATATCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGGACAGATGTGTATTCTTATGGCATTATTCTGTTACAATTGATATCAGGACGCAAAGTGGGCAACTCCAATAACTCGGAACAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATCATTGAGAGGTTGGCTTTACATGAACTGATTGACCCTCGTTTGGGAGAATCATATGACACATATGAACTATACCTCATGGCTAAAGCAGCATACTTTTGTATGCAAAGAAAGCCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGAGAAAGCAATCACTTCCTCTCCTTGGAAGATCAATTTGTACCTAATCATGACAGTTGA 1824 0.4057 MESRPPPSYIVVAADATRDRNEQEIKLIVDHIRARGDILSARDRLLLLCVLHKVSHPMGYQTLACPESFSGTNFRAMEEEVRKKVDLYANELLSSYEDFENEGVSIDIQVTAGFPIRQVILQEVTNYNASWIILDRHLRRDLRYHLNKMPCKVALVKDDLSVEIWRSHCSQDTIVTETKLIYSLSKFVSLSDCHNNQDFEQSIYSCKSYPHSITSSDTSSTIKSYTKHSYANRSRDHSCLLDFGSSSKHERSGISITGEYRHFITSQIGQKQNQCGFLPKSSDAPILCAGCGTKTELSIKESMRFNYSEIQLATNDFSKDNLVGEGGYGHVYKGVLKDGQQIAAKVRKEESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLHWHLFENTAAVLDWPQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPRNILLTHDFVPMLGDFGLAKWKTGDDPLQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGIILLQLISGRKVGNSNNSEQQQQSLRQWAEPIIERLALHELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMGEVVRLLEGESNHFLSLEDQFVPNHDS. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02339 607 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Seca3g02339 607 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Seca3g02339 607 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 289 392 - -
Seca3g02339 607 Gene3D Transferase(Phosphotransferase) domain 1 394 600 - -
Seca3g02339 607 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 158 - -
Seca3g02339 607 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 295 592 - -
Seca3g02339 607 Gene3D Phosphorylase Kinase; domain 1 289 392 - -
Seca3g02339 607 SUPERFAMILY Protein kinase-like (PK-like) 301 587 IPR011009 -
Seca3g02339 607 ProSiteProfiles Protein kinase domain profile. 317 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02339 607 Pfam Protein kinase domain 318 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02339 607 Gene3D HUPs 9 158 IPR014729 -
Seca3g02339 607 FunFam Lectin-domain containing receptor kinase A4.3 393 605 - -
Seca3g02339 607 CDD STKc_IRAK 323 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02339 Seca-Chr3 41437910 41453186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02339 305 588 Trihelix Transcription Factor Family AT5G38560 44.330 1.11e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca3g02339 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02339 - - vun:114163670 999.193