Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02328 ATGTTACACATGGAATCCAATGACCGCTTTGATGGAGCGAAATGCAACAATTTTCTTGGGAGTTACAATTGTTCATGCCCGGAAGGATATGAAGGAGATGGAAAAAATAATGGAACAAGATGTAGTCCCAAATTCAGTAACAATTCCAGAAGAGAGATCGTATTAATAATTGCTTTGAGTATGAGTGTAGGCATCATAACACTACTAGTGGGATGCTTTTATGTGTACTGGGCATTGAAGACAAGAAAGCTCATCAAACTTAAAGAAGAATTTTTTCAACAAAATGGTGGTCTATTGTTACAACAACAAATAGCCAGGCATAGAGGGTCAACTGAAACAGCTAAAGTTTTCACTGAAGAAGAGCTAAGAGATGCTACCAACAACTTCGATGAAGGAAAGATCCTAGGCCAAGGTGGACAGGGAACAGTTTACAAGGGAGTATTATTAGACAATAGAATTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCGAACCAAATTGAGCAATTTATCAATGAGGTCATCGTGCTTTCTCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGATGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAGTTCATTCACAATGGTACTCAACAGAAACTGCCGGAGCCTTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACAGAGTTGTGAAAACTACAAACATACTACTTGATCGTAATCTCATTGCAAAAGTTTCTGATTTTGGAGCTTCTAGAATTATCCCTCTTAATCAAAGTCAGTTAACTACTTTGGTGCAAGGAACACTAGGGTATCTTGACCCAGAATACTTCCAAACAAGCCAGTTAACTGAGAAGAGTGATGTCTATAGTTTTGGGGTTGTCCTAGCAGAGTTACTGACAGGAAAAAAGGCACTCTCTTTTGACAGACCAGAGGCTGATAGAAACCTAGCATTGTACTTCGTTTCTTCAATGAAAATGGGTAAGTTACTTCACATTTTGGATAGTCACATAATAAATGAGGCAAATATTGAGGTACTAATGGAAGTTGCCAATATTGCAAAACAATGTTTAAAGGTGAAAGGAGAGGAAAGACCTACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATGGCCATGGAAAAGCACCGATGGGGAAGTGTTAATTTGTCTTTAGAAGAGACTGAAAACTTGCTTAAAGAAGCGCCATCTGTTTTCAATATTGAAGACGGTGTTAGTGGAAATGGCACTAGTTCTTCTGGCTTTGATAGCATGAGTCGTATTTCGATGTCATTGGGTGGTGGAAGATGA 1317 0.3872 MLHMESNDRFDGAKCNNFLGSYNCSCPEGYEGDGKNNGTRCSPKFSNNSRREIVLIIALSMSVGIITLLVGCFYVYWALKTRKLIKLKEEFFQQNGGLLLQQQIARHRGSTETAKVFTEEELRDATNNFDEGKILGQGGQGTVYKGVLLDNRIVAIKKSKISDPNQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIHNGTQQKLPEPWHTCILLLLHQSYRVVKTTNILLDRNLIAKVSDFGASRIIPLNQSQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEADRNLALYFVSSMKMGKLLHILDSHIINEANIEVLMEVANIAKQCLKVKGEERPTMKEVAMELEGIMAMEKHRWGSVNLSLEETENLLKEAPSVFNIEDGVSGNGTSSSGFDSMSRISMSLGGGR. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02328 438 CDD EGF_CA 12 33 - -
Seca3g02328 438 Pfam Protein kinase domain 130 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02328 438 Pfam Protein kinase domain 229 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02328 438 SUPERFAMILY Protein kinase-like (PK-like) 113 380 IPR011009 -
Seca3g02328 438 ProSiteProfiles Protein kinase domain profile. 129 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02328 438 Gene3D Transferase(Phosphotransferase) domain 1 204 397 - -
Seca3g02328 438 FunFam Wall-associated receptor kinase 2 222 399 - -
Seca3g02328 438 FunFam Wall-associated receptor kinase 2 99 204 - -
Seca3g02328 438 Gene3D Laminin 4 45 - -
Seca3g02328 438 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 380 IPR045274 GO:0007166
Seca3g02328 438 Gene3D Phosphorylase Kinase; domain 1 103 203 - -
Seca3g02328 438 SUPERFAMILY EGF/Laminin 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02328 Seca-Chr3 41256911 41259155 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02328 11 431 Receptor kinase-like Gene Family AT1G21230 46.742 1.24e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g02328 Pkinase 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02328 - - gmx:100798027 629.402