Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02324 ATGACGTCACTGCCAAACTGTCCAACAAAGTGTGGCTCCGTCACTATTCCCTTCCCATTTGGCATGACGGAGGATTGTTCCCTTGATAACACGTTTCTCATAAGTTGCAACCAAACCTCTTCACCACACAGTCACATAAACAGTACTCCTTTCTTGCCACAAAGTAATCTTATAGCCAGCGATTGCTATGCTGGTAAAAGCAAACTCGCGAATTACACATTCTGGGAATTCAACCTGGATCAGTTAAATTTGGTCGTCTCAAGTCGAAACCAGTTTATGGTGATTGGCTGCAACACCGTTGGACTAATGTTGGGAACCGATTTTGAGGGAAAGAACTACACATCGGGATGCGTGTCTCTCTGCAGCAACGGGCGGCTTGCTGATATCGGGGCAAATGGGTCTTGCTCCGGCAATGGTTGTGCGTTCACCAACTTCACACGGTCTGCTTTCAATCCATGTGGTCATGCTTTTCTTGTGGAGGATGGAGCCTACAACTTTTTTTCCGAACACCTCGTTAAGTTGGAGCAGACAGCGTTTCCTGTGCTGCTGGATTGGGCAGTGGGGAACAAAACGTGCCAAGAAGCTCACAAAGAGGTTTCAAGTTATGCCTGTAAGGCAGACAACAATATTAATGAATGCATGGAATCCAACGAGTGTATTCATAGGGAAACATGCATCAACATTCCTGGGAGCTACAATTGTTCATGCCCTAGAGGCCAATATGGAGATGGAAAAAATAATGGAACAAGATGCAATACTAAATCCAGTAATAGTTCCAGGAGACAAAACATACTGATAATTGCTTTGAGTGTGAGTGTATGCATCATAGGAATACTCTTGGGAAGCTTTTATGTGTATTGGGCATTGAAGAAAAGAAAGCTCATCAAACTTAAAGAACAATTTTTCCAACAAAATGACAAGATTCTAGGCCAAGGTGGACAGGGAACTGTTTATAGAGGACTATTACCAGATAACAGAACTGTAGCAATAAAAAAGTCCAAATTCAACGATCCAAACCAAATTGAGCAGTTCATCAATGAGGTCTTCGTGCTTTCACAAATCAACCATAGGAATGTGGTAAAACTCTTAGGTTGTTGTTTAGAGACCGAAGTTCCCTTACTTGTTTATGAGTTCATTCCCAATGGTACTGTTTATGAGCATCTTCATGATCAAAGCCAGGTTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAGTAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCCACTTCTACACCAATCATTCACAGAGATGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAAAGTCAGTTAACCACTTTAGTGCAGGGAACATTGGGATATCTTGATCCAGAATACTTCTACACAAGCCAATTAACAGAGAAGAGTGATGTCTATAAGTTATTGACCGGAAAGAAGGCACTCTCTTTTGAAAGGCCAGAGGTTGATAGAAACCTTGCAGTGTACTTCGTTTCTAAAATGAAAGAGGGTCGTTTACTTCACATAGTGGATAGCCACATAATTGATGGGACAAATGTTGAGCAACTAACTGAGGTTGCTAATATTGCAAGAAGGTGTTTAAAGGTGAATGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAAATTGAGAGAATAACAGTTATGGAAAAGCACCCATGGGGAAGTGTCCCTTTGTCTTCAGATGAGACTAAAAACTTTCTCAAAGCTGCACCATCTGTTTTCAATGTTGAAGATGGTGTTAGTGGAAGTGGCATTATTAGTACTTCTGGCTTTGATAGAATGAACCGTATTTCGATGTCATTAGCAACAGCAGCTCAACCCATGACGTCACTGCCAAACTGTCCAACAAAGTGCGGCTCCGTCACTATTCCCTTCCCATTTGGCATGACGGAGGATTGTTCCCTTGATAACACGTTTCTCATAAGTTGCAACCAAACCTCTTCACCACACAGTTACACAAACAGTACTCCTTTCTTGCCACGAACCAATCTAAGTGTCCTAAACATCTCACCCGTCGGCCAACTGCACGTTTCATGTCCAGTAGCCAGCGATTGCTATGCTGACAGAGTTGGATTTGTGAGGGGAATCGATTATGAGGGAAAGAACTACATAACGGGATGCCTGTCTTTCTGCGACCGGCTTGCTGATATCGGGGCCAATAGGTCTTGCTCCGGCAATGGTTGTTGCGAGACTTCAGTACCCCCAGGACTATCGGAGTTAGAATATGTTTCTACTACCTATTTCAACATTACACGGGTTGACTTCAATCCATGTGCCTACGATTTCGTGCCCAGAGACCTCTCTAAGTTGGAGCAGACAGCGTTTCCTGTAGTGTTGGATTGGGCAGTGGGGAGCCAAACGTGCCGTGAAGCTCGGAAAAAGGTTTCAAGTTATGCCTGTAAGGCAAACAACAGTGAATGTTACGATGCAGCAGACAGACCTGGCTACCTTTGCAATTGTTCTCAAGGATTTCGGGGAAACCCTTACCTACCTCATGGTTGCCAAGATATTAACGAATGCATAGAATCCAACAATTGTATTCATGGAGCGACATGCATCAACCTTCTTGGGAGCTACAACTGTTCATGTCCAGAAGGATATGATGGAGACGGGAAAAATAATGGAACAAGATGCAGTCCAAAATCCAGTACTAATTCCAAGAGACAAATCATACTTGTTATTGCTTTGAGTGTGACTGTAAGTGTCATAGGACTACTCTTGGGAGGCTTTTATGTGTACTGGGAATTGAAGAAAAGAAAACTCATCAAACTTAAAGAACAACTTTTCCAACAAAATGGCAAGATCCTAGGCCAAGGCGGACAGGGAACTGTTTACAAAGGACTATTACTAGATAACAGATCTATAGCAATAAAAAAGTCCAAATTCAATGATCCAAACCAAATTGAGCAGTTCATCAATGAGGTCATCGTGCTTACTCAAATCAACCATAGGAATGTGACAGAAGTTCCCTTGCTTGTTTATGAGTTCATTCCTAATGGTACTGTTTATGAGCATCTTCATGATCAAAGCCAAGCATTGAAACTTACATGGAAAATAAGATTGAGAATAGCAGCAGAAACTGCTGGAGCCTTGGCATACTTACATTCTGCTACTTCAACACCAATCATACATAGAGATGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAAAGTCAGTTAACCACTTTAGTGCAGGGAACACTGGGATATCTTGACCCAGAATACTTCTACACAAGCCTGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGTAGAGTTATTGACAGGAAAGAAGGCACTCTGTTTTGTCAGGCCAGAGGTTGATAGAAACCTTGCAGTGTACTTCGTTTCTTCAATTGAAAAGGATGAGGTGAATCTTGAGCAAATAACTAGAGTTTCTAATATTGCAAGAAGGTGTTTAAAGGTGAAGGGAGATGAAAGGCCCACCATGAAAGAAGTGGCAATGGAGCTTGAGGGAATATTAGTTATGGAAAAGCACCCATGGGGAATTCGAAGTGTCCCTTTGTCTTCAGATGAGACTGAAAACTCTCTCAAAGTCGCACCATCTGTTTTCAATGTTGAAGATGGTGTTAGTGGAAAAACCCAACCCATGTCACTGCCAAACTGTCAAACAAACTGTGGCTCCGTCACCATTCCTTTCCCATTTGGCACCACCGAGTCCTGTTCCCTGGACAGCACTTTCCTCATCAATTGCAACCAAACCTCTTCAACACTACACACTCCTTTCTTAGCACAAAGAAATCTCAGTGTGCTAAACATCTCACTCAACGGCGAGCTGCACGTAGCATGGCCAGTAGCCAGCGATTGCTACGCTCGTAAAGTTGGCTGTGACACCATTGGATTAGTGGTGGGAAACGATTCTAAGGGAAAGAACTACACAACAGGATGCGTGTCTTTGTGCAACAGGCTTGATGATATCGAAGCCAATGGAACTTGCTCTGGCACTGGTTGTTGTGAGATTTCAATACCTCAAGGGCTTTTGAGTTTCGGTTACGTTTCTGCGAGTATGTTCAACCACACACGTGTCCTTGATTTCAATCCCTGCGACCTCGTCAAATTTGAAAAGACAGAGTTTCCTCTGGTGCTGGATTGGGCAATTGAGAACAAAACGTGCCTAGAAGCTCAGAAAGAGGTTTCAAGTTATGCCTGTAAGGCAGAGAATAGCGAATGTTACAATTCAATGAAGGGAGCTGGTTACCTTTGCAAATGCTCTAATGGTTTTCAGGGAAATCCTTACCTTCTTCATGGCTGTCAAGGTGTTAATGCTTATTTCTTTTATTTCTTCGTTAATGAATGCATGGAATCCAACGACTGCATTGATGGGGCCATATGCAGCAATTTTCCGGGGAGCTACAATTGTTCATGCGCGGAAGGATATGAAGGAGATGGGAAAAATAATGGAACCAGATGCAGTCCTAAATCCAGTACCAATTCCAGGAGAGAGATCATCCTAATAATTGCTTTGAGTGAGTATACTGTGTGTGAGTGTAAGCGTCTTAACCTTACTTGGGGGAAGCTTTTATGTGTATTGGGCATTGAAGAAAAGAAAGCTCATCAGACTTAA 4632 0.4249 MTSLPNCPTKCGSVTIPFPFGMTEDCSLDNTFLISCNQTSSPHSHINSTPFLPQSNLIASDCYAGKSKLANYTFWEFNLDQLNLVVSSRNQFMVIGCNTVGLMLGTDFEGKNYTSGCVSLCSNGRLADIGANGSCSGNGCAFTNFTRSAFNPCGHAFLVEDGAYNFFSEHLVKLEQTAFPVLLDWAVGNKTCQEAHKEVSSYACKADNNINECMESNECIHRETCINIPGSYNCSCPRGQYGDGKNNGTRCNTKSSNSSRRQNILIIALSVSVCIIGILLGSFYVYWALKKRKLIKLKEQFFQQNDKILGQGGQGTVYRGLLPDNRTVAIKKSKFNDPNQIEQFINEVFVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTVYEHLHDQSQVLKLTWKTRLRIAVETAGALAYLHSATSTPIIHRDVSDFGASRIIPLDQSQLTTLVQGTLGYLDPEYFYTSQLTEKSDVYKLLTGKKALSFERPEVDRNLAVYFVSKMKEGRLLHIVDSHIIDGTNVEQLTEVANIARRCLKVNGEERPTMKEVAMEIERITVMEKHPWGSVPLSSDETKNFLKAAPSVFNVEDGVSGSGIISTSGFDRMNRISMSLATAAQPMTSLPNCPTKCGSVTIPFPFGMTEDCSLDNTFLISCNQTSSPHSYTNSTPFLPRTNLSVLNISPVGQLHVSCPVASDCYADRVGFVRGIDYEGKNYITGCLSFCDRLADIGANRSCSGNGCCETSVPPGLSELEYVSTTYFNITRVDFNPCAYDFVPRDLSKLEQTAFPVVLDWAVGSQTCREARKKVSSYACKANNSECYDAADRPGYLCNCSQGFRGNPYLPHGCQDINECIESNNCIHGATCINLLGSYNCSCPEGYDGDGKNNGTRCSPKSSTNSKRQIILVIALSVTVSVIGLLLGGFYVYWELKKRKLIKLKEQLFQQNGKILGQGGQGTVYKGLLLDNRSIAIKKSKFNDPNQIEQFINEVIVLTQINHRNVTEVPLLVYEFIPNGTVYEHLHDQSQALKLTWKIRLRIAAETAGALAYLHSATSTPIIHRDVSDFGASRIIPLDQSQLTTLVQGTLGYLDPEYFYTSLLTEKSDVYSFGVVLVELLTGKKALCFVRPEVDRNLAVYFVSSIEKDEVNLEQITRVSNIARRCLKVKGDERPTMKEVAMELEGILVMEKHPWGIRSVPLSSDETENSLKVAPSVFNVEDGVSGKTQPMSLPNCQTNCGSVTIPFPFGTTESCSLDSTFLINCNQTSSTLHTPFLAQRNLSVLNISLNGELHVAWPVASDCYARKVGCDTIGLVVGNDSKGKNYTTGCVSLCNRLDDIEANGTCSGTGCCEISIPQGLLSFGYVSASMFNHTRVLDFNPCDLVKFEKTEFPLVLDWAIENKTCLEAQKEVSSYACKAENSECYNSMKGAGYLCKCSNGFQGNPYLLHGCQGVNAYFFYFFVNECMESNDCIDGAICSNFPGSYNCSCAEGYEGDGKNNGTRCSPKSSTNSRREIILIIALSEYTVCECKRLNLTWGKLLCVLGIEEKKAHQT. 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02324 1543 Pfam Wall-associated receptor kinase galacturonan-binding 623 681 IPR025287 GO:0030247
Seca3g02324 1543 Pfam Wall-associated receptor kinase galacturonan-binding 1225 1280 IPR025287 GO:0030247
Seca3g02324 1543 ProSitePatterns Calcium-binding EGF-like domain signature. 209 234 IPR018097 GO:0005509
Seca3g02324 1543 Pfam Protein tyrosine and serine/threonine kinase 942 1173 IPR001245 GO:0004672|GO:0006468
Seca3g02324 1543 Pfam Protein tyrosine and serine/threonine kinase 306 549 IPR001245 GO:0004672|GO:0006468
Seca3g02324 1543 ProSiteProfiles Protein kinase domain profile. 939 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02324 1543 FunFam Wall-associated receptor kinase 2 379 574 - -
Seca3g02324 1543 Gene3D Laminin 208 253 - -
Seca3g02324 1543 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1467 1478 IPR000152 -
Seca3g02324 1543 FunFam Fibrillin 2 1450 1489 - -
Seca3g02324 1543 CDD EGF_CA 1452 1485 - -
Seca3g02324 1543 ProSitePatterns Calcium-binding EGF-like domain signature. 845 870 IPR018097 GO:0005509
Seca3g02324 1543 FunFam Fibrillin 2 844 883 - -
Seca3g02324 1543 ProSiteProfiles EGF-like domain profile. 1451 1494 IPR000742 -
Seca3g02324 1543 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 225 236 IPR000152 -
Seca3g02324 1543 SMART egfca_6 1452 1494 IPR001881 GO:0005509
Seca3g02324 1543 SMART egfca_6 763 844 IPR001881 GO:0005509
Seca3g02324 1543 SMART egfca_6 845 888 IPR001881 GO:0005509
Seca3g02324 1543 SMART egfca_6 209 252 IPR001881 GO:0005509
Seca3g02324 1543 FunFam Wall-associated receptor kinase 2 795 843 - -
Seca3g02324 1543 FunFam Wall-associated receptor kinase-like 10 321 378 - -
Seca3g02324 1543 SUPERFAMILY Protein kinase-like (PK-like) 942 1199 IPR011009 -
Seca3g02324 1543 SMART egf_5 212 252 IPR000742 -
Seca3g02324 1543 SMART egf_5 1393 1441 IPR000742 -
Seca3g02324 1543 SMART egf_5 796 844 IPR000742 -
Seca3g02324 1543 SMART egf_5 848 888 IPR000742 -
Seca3g02324 1543 SMART egf_5 1454 1494 IPR000742 -
Seca3g02324 1543 ProSiteProfiles EGF-like domain profile. 845 888 IPR000742 -
Seca3g02324 1543 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 861 872 IPR000152 -
Seca3g02324 1543 ProSiteProfiles EGF-like domain profile. 209 252 IPR000742 -
Seca3g02324 1543 SUPERFAMILY EGF/Laminin 844 881 - -
Seca3g02324 1543 CDD EGF_CA 845 879 - -
Seca3g02324 1543 SUPERFAMILY Protein kinase-like (PK-like) 306 550 IPR011009 -
Seca3g02324 1543 SUPERFAMILY EGF/Laminin 1452 1488 - -
Seca3g02324 1543 Gene3D Phosphorylase Kinase; domain 1 288 378 - -
Seca3g02324 1543 Gene3D Phosphorylase Kinase; domain 1 921 1001 - -
Seca3g02324 1543 SUPERFAMILY EGF/Laminin 209 245 - -
Seca3g02324 1543 Gene3D Transferase(Phosphotransferase) domain 1 1006 1183 - -
Seca3g02324 1543 Gene3D Transferase(Phosphotransferase) domain 1 379 561 - -
Seca3g02324 1543 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 555 IPR045274 GO:0007166
Seca3g02324 1543 CDD EGF_CA 209 243 - -
Seca3g02324 1543 Pfam Calcium-binding EGF domain 1452 1493 IPR001881 GO:0005509
Seca3g02324 1543 Pfam Calcium-binding EGF domain 210 251 IPR001881 GO:0005509
Seca3g02324 1543 Pfam Calcium-binding EGF domain 845 887 IPR001881 GO:0005509
Seca3g02324 1543 ProSiteProfiles Protein kinase domain profile. 303 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02324 1543 Gene3D Laminin 795 887 - -
Seca3g02324 1543 Gene3D Laminin 1392 1493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02324 Seca-Chr3 41214633 41233703 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02324 6 607 Receptor kinase-like Gene Family AT1G21230 39.917 8.80e-140 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca3g02324 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02324 - - aip:107607783 1212.59