Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02321 ATGGCTTCATCCAAAAAAGTAGTGCTACTTGCTTGGTTGCTACTAATGATCTCTGCAGTGTCACAAACAATTCATCCTCGCTGCCATAATAAATGTGGAAGTGTTAACATTCCGTATCCATTTGGTACATCTGAGGACTGTTACTTAAACAACAACTTTTATGTTGCTTGTAACACAAGTTACTACCCTCCCAAACCATTTTTGTGGAATTTGACCTCAAATATTGAGATCCTAGAAGTGTCATTGAATGGCCATTTGCGGATAAATTCCTTTGTAGCTTATGTCTGCCATGATCAAAATGACATTCATGTGGATACAGGGAGAGCATCTATGTCTTTGCAAGCATTCCCCTTCTCAGTTACTAGAAACAAGTTCATTGGAATTGGATGTGATACCCTTTCAGTCATCAATGCAACAATTGGGAAAAATTACTCTACTGGGGGGTGTTTCTCACTTTGTAGTAGTATAGATAATTCAGCTAATGGATCTTGTTTTGGTATTGGTTGCTGCCAAACCTCTATTCCTAAAAACATTCTGAAATATGAAGCTTATGTCCTGAGCTCCAATAAGATGCAAAGGGATGTGAACAACCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCAATTTTTCCAAAGCTGACTTCATCAATCTACAGAATAGAAGAACTGCTCCAACAGTTCTTGATTGGTCTGTTGGGAATCAGACATGTGAAGAAGCTAAGAACAACTTGATTCTCTATGCCTGCCAAGCAAATAGCATGTGTATTGACTCTGACAATGGACCAGGGTACCTCTGTAAATGCTCACAAGGTTATGTGGGAAATGCTTACCTTCCTGGTGGATGCCAAGATATTGATGAGTGCACCAATCCAAGTCTAAATGATTGTTCAGATATTTGCATTAACTTACCTGGTAGTTATAAATGTTCTTGTCCCAAGACCAAGAGGCACCGGGGAGATGGTAAAAAAGGTGGAAGTGGCTGTGTCTCTGATCTACAACGTGAGGTTAATGAGATTGAAATAGCCAATGTAGGTATTGGCATAGGCCTTTTGGTATTGTTAATGGGTAGCGGCTGGCTATACCTTGTGGTCCGTAAAAGAAAACGAATGAGACTTACAGAAAGATATTTTAAGCAAAATGGTGGCTTGATGTTGCAGAAGCAAATTTCCAACATAGAAGGATCAACTGATCAGACAGTCAAAATTTTTACTGCACAAGAGCTAAAGAAAGCCACTGAAAACTTTCATGAGAGCAGAATCATTGGCAGAGGAGGATATGGTACAGTTTATAAGGGAATAATTCCAAATGACAAAGTTGTTGCTATAAAGAAATCCAAACTAATAGACCACAGCCAAATTGAGCAATTCATCAATGAAGTGGTTGTACTTTCCCAAATTAACCACAGAAATGTGGTCAAACTCCTTGGTTGTTGTTTAGAGACAGAAATGCCACTGCTGGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATCCACAATGAAAACAATGCACAAGCCACCAACACCGTACTTTCTTGGGAAACAAGACTAAGAATAGCAACAGAAACAGCAGGTGTGCTTTCATACCTACATTCTGCTGCTTCCACACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACTGCAAAAGTTTCTGACTTTGGGACCTCAAGATTGATTCCACGTGACAAATGTCAATTGACAACATTGGTTCAGGGAACTCTTGGATACCTTGACCCTGAATACTTCCAAACTAGTCAACTAACTGAGAAAAGTGATGTGTATAGCTTTGGTGTTGTACTTGCAGAGTTGCTAACCGGAAGAAGGGCACTTTCTTTTGACAAGCCAGAGGCAGAGAGAAATTTAGCCATGTATTTTCTTTCAGCTTTTAAAAATGATTGCTTGTTTCAAATTCTTGAGGATTGTGTCAGTAATGAGGGAAATAGGGAGCAGGTGAAGGAAGTTGCTAATATTGCTGAATGGTGCTTGAAACTTAGAGGTGAGGAAAGACCCACCATGAAGGAAGTGGCCATGGAATTGGATAGTCTGAGAATGATGGCTTCAACTCCACGGACTAATAATGCCCCATCAAATGCAACAGAATATGGAATTGGTGAAAGATCAGGTCTAACAGACTGTACCAGTAGTCATAGTCATTATACTTATACTGCATCTACATGTGTTGGGCATGAGGATGACACCATTTGCAATGACGTGATGTCACCCCTATGGGATGGCAGATGA 2277 0.3992 MASSKKVVLLAWLLLMISAVSQTIHPRCHNKCGSVNIPYPFGTSEDCYLNNNFYVACNTSYYPPKPFLWNLTSNIEILEVSLNGHLRINSFVAYVCHDQNDIHVDTGRASMSLQAFPFSVTRNKFIGIGCDTLSVINATIGKNYSTGGCFSLCSSIDNSANGSCFGIGCCQTSIPKNILKYEAYVLSSNKMQRDVNNPCSYSLLVEEDSFNFSKADFINLQNRRTAPTVLDWSVGNQTCEEAKNNLILYACQANSMCIDSDNGPGYLCKCSQGYVGNAYLPGGCQDIDECTNPSLNDCSDICINLPGSYKCSCPKTKRHRGDGKKGGSGCVSDLQREVNEIEIANVGIGIGLLVLLMGSGWLYLVVRKRKRMRLTERYFKQNGGLMLQKQISNIEGSTDQTVKIFTAQELKKATENFHESRIIGRGGYGTVYKGIIPNDKVVAIKKSKLIDHSQIEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNENNAQATNTVLSWETRLRIATETAGVLSYLHSAASTPIIHRDFKSTNILLDDKYTAKVSDFGTSRLIPRDKCQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDKPEAERNLAMYFLSAFKNDCLFQILEDCVSNEGNREQVKEVANIAEWCLKLRGEERPTMKEVAMELDSLRMMASTPRTNNAPSNATEYGIGERSGLTDCTSSHSHYTYTASTCVGHEDDTICNDVMSPLWDGR. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02321 758 FunFam Wall-associated receptor kinase 2 493 713 - -
Seca3g02321 758 Gene3D Phosphorylase Kinase; domain 1 381 492 - -
Seca3g02321 758 SUPERFAMILY EGF/Laminin 285 321 - -
Seca3g02321 758 Pfam Calcium-binding EGF domain 286 316 IPR001881 GO:0005509
Seca3g02321 758 SMART egf_5 289 331 IPR000742 -
Seca3g02321 758 SMART egf_5 238 285 IPR000742 -
Seca3g02321 758 FunFam Wall-associated receptor kinase 2 386 492 - -
Seca3g02321 758 CDD EGF_CA 286 314 - -
Seca3g02321 758 Pfam Wall-associated receptor kinase galacturonan-binding 28 87 IPR025287 GO:0030247
Seca3g02321 758 Gene3D Laminin 236 288 - -
Seca3g02321 758 ProSiteProfiles Protein kinase domain profile. 417 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02321 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 701 IPR045274 GO:0007166
Seca3g02321 758 ProSitePatterns Calcium-binding EGF-like domain signature. 286 311 IPR018097 GO:0005509
Seca3g02321 758 CDD STKc_IRAK 423 694 - -
Seca3g02321 758 SMART egfca_6 286 331 IPR001881 GO:0005509
Seca3g02321 758 Pfam Protein kinase domain 417 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02321 758 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Seca3g02321 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Seca3g02321 758 Gene3D Laminin 289 325 - -
Seca3g02321 758 Gene3D Transferase(Phosphotransferase) domain 1 493 713 - -
Seca3g02321 758 SUPERFAMILY Protein kinase-like (PK-like) 403 706 IPR011009 -
Seca3g02321 758 FunFam Wall-associated receptor kinase 2 237 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02321 Seca-Chr3 41163840 41166562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02321 7 716 Receptor kinase-like Gene Family AT1G21230 46.260 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca3g02321 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02321 - - gmx:100797492 1222.61